Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O10
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 49 4e-06
11_02_0011 - 7337618-7338496,7338596-7338991 45 6e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 44 8e-05
11_01_0750 - 6315126-6315896,6316371-6316784 37 0.016
11_01_0771 + 6453130-6454488 36 0.027
11_02_0012 - 7346282-7347136,7347234-7347593 35 0.047
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 32 0.44
05_03_0246 + 10895627-10895829,10897012-10897078,10898258-108984... 28 5.4
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 28 5.4
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 28 5.4
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 48.8 bits (111), Expect = 4e-06
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = -3
Query: 603 LKLIELPYV--GEES--SLLLVLPN*IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYL 436
LK+++LPY G++ S+ ++LP DGL +L EKL + LE+ L
Sbjct: 297 LKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFKL 356
Query: 435 PKFKCETTTNLKEVLQAMNVKKLFEPGQARLDNLLKN--GGDLYVSEAVQKAFIXXXXXX 262
PKFK ++L+++ + F +A L ++ + G +L+VS K+F+
Sbjct: 357 PKFKISFGFEASDLLKSLGLHLPFS-SEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEG 415
Query: 261 XXXXXXXVFYFTRSSRVVNTIPFIVDRPFYYTLK 160
T S + F+ D PF + ++
Sbjct: 416 TEAAAATAAVITLRSAPI-AEDFVADHPFLFLIQ 448
Score = 42.7 bits (96), Expect = 2e-04
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Frame = -3
Query: 603 LKLIELPYV--GEES--SLLLVLPN*IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYL 436
LK+++LPY+ G++ S+ ++LP DGL +L EKL + +E + L
Sbjct: 549 LKVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFMENHIPMRPVHVGQFKL 608
Query: 435 PKFKCETTTNLKEVLQAMNVKKLFEPGQARLDNLLKNGG--DLYVSEAVQKAFIXXXXXX 262
PKFK +L+ + + LF + L ++ + G +L+VS K+FI
Sbjct: 609 PKFKISFGFGASGLLKGLGLPLLF-GSEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNEEG 667
Query: 261 XXXXXXXVFYFTRSSRVVNTIPFIVDRPFYYTLK 160
+ S + F+ D PF + ++
Sbjct: 668 TEATAAVMVSMEHSR--PRRLNFVADHPFMFLIR 699
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 44.8 bits (101), Expect = 6e-05
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Frame = -3
Query: 564 SLLLVLPN*IDGLHALEEKL--KKDLSVLERAQRNMYTNEV-DVYLPKFKCETTTNLKEV 394
S+ + LP+ DGL AL +K+ S R R EV D+ +P+FK + + V
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322
Query: 393 LQAMNVKKLFEPGQARLDNLL----KNGGDLYVSEAVQKAFI 280
LQ M V F+ G+A L + + GG L V E +A +
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVV 364
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 44.4 bits (100), Expect = 8e-05
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)
Frame = -3
Query: 603 LKLIELPYVG----EESSLLLVLPN*IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYL 436
LK+++LPY + S+ ++LP DGL +L KL + LE+ L
Sbjct: 89 LKVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKL 148
Query: 435 PKFKCETTTNLKEVLQAMNVKKLFEPGQARLDNLL--KNGGDLYVSEAVQKAFIXXXXXX 262
PKFK ++L+ + ++ F +A L ++ +L+VS K+F+
Sbjct: 149 PKFKISFGFEASDLLKILGLQLPFS-SKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEG 207
Query: 261 XXXXXXXVFYFTRSSRVVNTIPFIVDRPFYYTLK 160
+ S V T+ F+ D PF + ++
Sbjct: 208 TEAAAASAAVVSFRSAPV-TVDFVADHPFLFLIR 240
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 36.7 bits (81), Expect = 0.016
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Frame = -3
Query: 600 KLIELPYVGEES----SLLLVLPN*IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYLP 433
K+I+LPY ++ S+ + LP+ DGL L +K+ + LE+ + V + +P
Sbjct: 227 KVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKCH-VGISVP 285
Query: 432 KFKCETTTNLKEVLQAMNVKKLFEPGQARLDNLLK---NGGDLYVSEAVQKAFI 280
FK ++K+ L+ M ++ F +A +++K + G L++S+ + KA +
Sbjct: 286 NFKISFQIDVKDFLKDMGLELPF-LREAEFSDMIKEDDSSGPLFLSDVLHKAVL 338
>11_01_0771 + 6453130-6454488
Length = 452
Score = 35.9 bits (79), Expect = 0.027
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Frame = -3
Query: 564 SLLLVLPN*IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVY-LPKFKCETTTNLKEVLQ 388
++ + LP+ DGL L E++ L + V + +PKFK ++ L+
Sbjct: 295 AMAIFLPDARDGLRGLVERMASRPGFLHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGALE 354
Query: 387 AMNVKKLFEPGQARLDNLLKNGGD---LYVSEAVQKAFIXXXXXXXXXXXXXVFYFTRSS 217
+ ++ F P A L +++++ G L+V + KA I + S
Sbjct: 355 QLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIEVNEEGTVAAAATMTRMLPSG 414
Query: 216 RVVNTIPFIVDRPFYY 169
+ F+ + PF Y
Sbjct: 415 VPPPPVDFVAEHPFAY 430
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.1 bits (77), Expect = 0.047
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Frame = -3
Query: 564 SLLLVLPN*IDGLHALEEKLK------KDLSVLERAQRNMYTNEV-DVYLPKFKCETTTN 406
S+ + LP+ DGL AL +K+ S L + +V D+ +P+FK +
Sbjct: 243 SMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSE 302
Query: 405 LKEVLQAMNVKKLFEPGQARLDNLLKNGGDLYVSEAVQKAFIXXXXXXXXXXXXXVFYFT 226
+ EVL+ M + F+ G+ L ++ G+L V E V +
Sbjct: 303 MNEVLKGMGIGAAFDVGKVDLSGMI--DGELVVVEKVMHRAVVEVNEEGTEAAAATACTM 360
Query: 225 RSSRVVNTIP--FIVDRPF-YYTLKYKQN-FLFNG 133
+ + T P F+ D PF ++ ++ K + LF G
Sbjct: 361 KFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAG 395
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 31.9 bits (69), Expect = 0.44
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = -3
Query: 537 IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFEP 358
IDG A+ KLK++L+ ER R++ +V + K K E ++ QA+ +K E
Sbjct: 286 IDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMKEKLE-----DDIAQAVALKIELER 340
Query: 357 GQARLDNLLKN 325
R N+LKN
Sbjct: 341 EHVRGTNVLKN 351
>05_03_0246 +
10895627-10895829,10897012-10897078,10898258-10898433,
10898450-10898583,10900165-10901594
Length = 669
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -3
Query: 603 LKLIE-LPYVGEESSLLLVLPN*-IDGLHALEEKLKKDLSVLERAQRNMYTNEVDVYLPK 430
+++IE +P++ ++S +L I G L ++++ L VL Q Y ++YL +
Sbjct: 580 IQIIERMPFMADDSVWGALLGACKIHGNIELSAQIREKLIVLGGQQPGRYVTVRNMYLEE 639
Query: 429 FKCETTTNLKEVLQAMNVKKL 367
T + EV+Q +KK+
Sbjct: 640 GNWYAATRMGEVMQEAGIKKI 660
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 409 CCSFTFKFGKVNIDFIC 459
CCS+ K GKVN D C
Sbjct: 418 CCSYDLKLGKVNCDNCC 434
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 409 CCSFTFKFGKVNIDFIC 459
CCS+ K GKVN D C
Sbjct: 418 CCSYDLKLGKVNCDNCC 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,516
Number of Sequences: 37544
Number of extensions: 191100
Number of successful extensions: 407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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