Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O10
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    25   0.47 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 109 ISRKYEYYNLENQLKNLYQRLIN 41
           +S  Y Y N  N  K LY  +IN
Sbjct: 318 LSNNYNYNNYNNNYKPLYYNIIN 340


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 173 IIR*STNKISYLTEYTFLRYSDLKKIRI 90
           I+  + NK+ ++  Y F R   L+ IR+
Sbjct: 506 ILNLARNKVQHVERYAFERNMRLEAIRL 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,253
Number of Sequences: 438
Number of extensions: 2493
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)