Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O08
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600...    27   8.0  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   8.0  

>10_08_0558 +
           18756797-18756887,18757189-18757262,18759881-18760069,
           18760190-18760309,18760457-18760521,18760684-18760828,
           18761304-18763337,18763904-18764025,18764127-18764309,
           18764635-18764690,18765086-18765141
          Length = 1044

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +3

Query: 423 HTTSRFVKHD--STTSLSVLPST 485
           H TS+ +KHD  +T S +VLPST
Sbjct: 910 HATSKRIKHDDGTTGSCNVLPST 932


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 63  PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 188
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,430
Number of Sequences: 37544
Number of extensions: 237959
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)