Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O08
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.22 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          32   0.29 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)               29   2.7  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    28   4.7  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 179 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 358
           AL +   ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239

Query: 359 YSQ 367
           Y Q
Sbjct: 240 YGQ 242


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +3

Query: 141 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSALKS 320
           +L HST T S    L  T     T  +++++T  + TLTH +IT S I         L  
Sbjct: 26  NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84

Query: 321 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 431
           + L+    +HS    + +  +  +        +TH+T
Sbjct: 85  LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121



 Score = 30.7 bits (66), Expect = 0.67
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 219 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTVYS* 395
           ++++ T + +TLTHS++T   +   N   S L    L+  N +HS LT + L  LT+   
Sbjct: 1   TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLTYS 60

Query: 396 PKKRLRLVTHT-TSRFVKHDSTTSLSVLPST 485
               L +   T T   + H + T L++  ST
Sbjct: 61  TLTHLTITYSTITHSTLTHLTLTHLTLTYST 91



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 108 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 275
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 276 SLILKRNFISSALKSMMLSLRN*SHS 353
           S +       S L    ++    +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 105 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 278
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 279 LILKRNFISSALKSMMLSLRN*SH 350
            +       S +    L+  N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 120  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 212
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
          Length = 306

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 131 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 262
           +G   +   +  F+P+ L F  T+  D  FY   NR +G IN++
Sbjct: 1   MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 296 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 388
           LH  G K++D VVE +  F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 288  KRNFISSALKSMMLSLRN*SHSLTIANLMPLT--VYS*PKKRLRLVTHTTSRFVKHDSTT 461
            K  F++   K +MLS+R+  +SLT+ +++P    VY    K  ++ T T S  V  ++  
Sbjct: 3076 KDEFLAMESKKLMLSVRDRKNSLTLYHVIPKDSGVYKCVLKN-KVGTATKSFTVDVEAKK 3134

Query: 462  SLSVLP 479
            S  ++P
Sbjct: 3135 SKGIIP 3140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,418
Number of Sequences: 59808
Number of extensions: 285953
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)