Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O08
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 1.0
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 1.0
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 1.0
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 29 1.8
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 3.1
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 3.1
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 4.1
U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical pr... 27 7.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.5
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 9.5
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 72 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 221
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 72 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 221
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 72 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 221
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 78 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 236
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 272
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 272
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 14 HDEKAINFVGNYWQENADLYEEEV 85
HDE A+N Y+Q + DL E++V
Sbjct: 75 HDELAVNNADEYFQGDVDLSEQQV 98
>U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical
protein C01F1.5 protein.
Length = 308
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 146 KPFDKHTFMPSALDFYQTALRDPAFYQLYNR 238
KP K F PS DF + LRD AF Q+ R
Sbjct: 56 KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6154 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6190
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 323
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 26.6 bits (56), Expect = 9.5
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Frame = -2
Query: 346 D*FLNDNIIDFNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 185
D F N+ + N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 184 --KRT---GHEGVLVEWFRCCTEHM 125
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,904,367
Number of Sequences: 27780
Number of extensions: 223407
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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