Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O07
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.52 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   1.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   2.8  
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   4.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   8.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.5  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 233 HLLQKC---DLLFFLILVNNIQFDNT*IRYIADNPNYMDN 123
           HL+Q+C   +L+ F    NN+  D   ++  ADNP  + N
Sbjct: 645 HLIQRCARKELVLFEDFENNVSIDEKVLKEEADNPFILPN 684


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 168 YVNTLYC*QPQLYGQPTHSQTHYN*ITITILDH 70
           +VNT+YC    LY  P  S  H     +  LDH
Sbjct: 178 FVNTVYCHTCHLYRPPRASHCHLCDNCVEYLDH 210


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 94  NNNYDTRSLNNVIDTKQQSSPRAGVMPAG 8
           N+  ++  +N+V +++  +SP A V+P G
Sbjct: 532 NSKRESSKINSVTESESTASPAASVIPVG 560


>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 315 STIVKMSPVAILLMKYFICSICAS*CF 395
           S+ V  SP+  L M YF C +  S CF
Sbjct: 49  SSPVVSSPIHALSMSYFECRLLQSVCF 75


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 NATKIVVSVYEQTDANMDVNRLERTLSPVND 322
           + TK +   + Q   N D+N  + T+S +ND
Sbjct: 190 SVTKSITISHSQFAINEDINETDDTISDIND 220


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 496 SCYWFAIISYLLNVKNGHLSTYL 428
           SC  + +I+YLL V + HL   L
Sbjct: 642 SCAGYCVITYLLGVGDRHLDNLL 664


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 316  QRLLKCRQSLYCL*NISFVQFVRHNVFITFISVRFVRTSKYLNARFLHLTN 468
            ++L+     ++CL  +SF   +  N+F+   +    + + +L   FL+L N
Sbjct: 879  KKLVNPNTKVFCLYLVSFSYSIISNLFLGCETTERAQLASFLLKEFLNLKN 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,741
Number of Sequences: 5004
Number of extensions: 33832
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)