Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O07
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF125451-12|AAP13764.1|  173|Caenorhabditis elegans Hypothetical...    27   5.8  
AF125451-10|AAD12819.2|  511|Caenorhabditis elegans Hypothetical...    27   5.8  

>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
           protein ZK430.5 protein.
          Length = 1276

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 348 LLMKYFICSICAS*CFYYFYIREVCS 425
           L ++ F  +I A  CF+YFY  E+C+
Sbjct: 139 LEVRRFFAAIPAKLCFFYFYTGELCT 164


>AF125451-12|AAP13764.1|  173|Caenorhabditis elegans Hypothetical
           protein Y37E11B.10c protein.
          Length = 173

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 94  NNNYDTRSLNNVIDTKQQSSPRAGVMPAGLP 2
           N N  T S    +D K Q S + G M  G+P
Sbjct: 131 NTNMSTASQPTSLDDKSQKSQKTGSMKTGIP 161


>AF125451-10|AAD12819.2|  511|Caenorhabditis elegans Hypothetical
           protein Y37E11B.10a protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 94  NNNYDTRSLNNVIDTKQQSSPRAGVMPAGLP 2
           N N  T S    +D K Q S + G M  G+P
Sbjct: 131 NTNMSTASQPTSLDDKSQKSQKTGSMKTGIP 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,392
Number of Sequences: 27780
Number of extensions: 191546
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)