Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O07
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N...    27   7.2  
At2g12130.1 68415.m01306 hypothetical protein                          27   7.2  

>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
           from Arabidopsis thaliana, respiratory burst oxidase
           homolog [GI:16549087] from Solanum tuberosum; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 941

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +2

Query: 131 YSWGCQQYNVFTYYRIVYY*LKLKKIINRTFVTNATKIVVSVYEQTDANMDVNRLERTLS 310
           + W C QY     + ++ Y L + K    T   N   I++ V   T   +    L  ++ 
Sbjct: 389 FMWKCYQYKHKDAFHVMGYCLVMAKGAAETLKFNMALILLPVCRNTITYLRSTALSHSV- 447

Query: 311 PVNDC*N 331
           P +DC N
Sbjct: 448 PFDDCIN 454


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 378 CAS*CFYYFYIREVCSY 428
           C   CF+Y+Y RE+C +
Sbjct: 192 CCRNCFFYWYARELCIF 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,245
Number of Sequences: 28952
Number of extensions: 157273
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)