Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O06
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    31   0.35 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    30   1.1  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    30   1.1  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    30   1.1  
AL117207-17|CAI79269.1|  421|Caenorhabditis elegans Hypothetical...    27   9.9  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 395 IEKCAENCISXPEYNPVCGSDNK 463
           +E C+ENC     +NPVC  D+K
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSK 464


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 431 EYNPVCGSDNKTYKKQARL 487
           E+  VCGSD KTY  + RL
Sbjct: 471 EFKEVCGSDGKTYSNECRL 489



 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 401 KCAENCISXPEYNPVCGSDNKTYKKQARL 487
           KC+E C     +  VCG+D KTY  +  L
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNECFL 344


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 431 EYNPVCGSDNKTYKKQARL 487
           E+  VCGSD KTY  + RL
Sbjct: 479 EFKEVCGSDGKTYSNECRL 497



 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 401 KCAENCISXPEYNPVCGSDNKTYKKQARL 487
           KC+E C     +  VCG+D KTY  +  L
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNECFL 352


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 330 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFXHQNTTPCVVAIIKLTKSRQDYF 491
           + R++ + +H   AL +H  ++L   +R A     +  CV+++IK   S +  F
Sbjct: 81  EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSMECSF 134


>AL117207-17|CAI79269.1|  421|Caenorhabditis elegans Hypothetical
           protein Y60A3A.25 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 182 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNN 280
           +D   + + QD N   W+ + N  + Q P DNN
Sbjct: 106 MDMQPYQEYQDNNESGWVDLNNDNQFQQP-DNN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,739
Number of Sequences: 27780
Number of extensions: 253410
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)