Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O04
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   0.62 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   3.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   5.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   7.6  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    24   7.6  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 9   FFFLKNKTIYYFKLQE 56
           F FLKNK +YY +L E
Sbjct: 300 FLFLKNKNVYYSRLDE 315


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 128 IFLQFIAISLSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNIL 277
           I+  F+A S+++  +L ++ DL   L +   VEI   + T  +  S+ I+
Sbjct: 39  IYHDFVATSINYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPII 88


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 220 SGNRPCN*YSTIICI 264
           +GN+PC  Y  ++CI
Sbjct: 804 AGNKPCQRYHALLCI 818


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 249 TVLVAWSISTAKYDSRRNYRSWC*YSMEICD--KEIAINC 136
           T +  W++ T K    ++  +   +S+ ICD  K +A+ C
Sbjct: 90  TTITEWNLHTGKPLVNQDSNAGAIWSIAICDETKTLAVGC 129


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 230 DHATNTVPSFVSSNILFL 283
           DHATNT+  FV   + ++
Sbjct: 46  DHATNTIIKFVPQQVAYV 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,609
Number of Sequences: 5004
Number of extensions: 21158
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)