Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O04
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118...    26   6.9  
01_05_0557 + 23243507-23243855,23243952-23244331,23244866-232449...    26   9.1  

>07_03_1689 +
           28710936-28711129,28711283-28711341,28711858-28711892,
           28712123-28712226,28712325-28712397,28712495-28712553,
           28712656-28712721,28712815-28712898,28712995-28713059,
           28713152-28713342,28713522-28713612,28714076-28714134,
           28714732-28714872,28715214-28715321
          Length = 442

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -2

Query: 294 CQILRNKILEDTNDGTVLVAWSISTAKYDSRRN 196
           CQ+    +  + +D  +  +W +   KYD+  N
Sbjct: 135 CQVRPGSLHHEKDDAAIFASWGVDYLKYDNCYN 167


>01_05_0557 +
           23243507-23243855,23243952-23244331,23244866-23244931,
           23245023-23245136,23245226-23245342,23245444-23245570,
           23245660-23246486
          Length = 659

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 177 INTMTYSFFWNHIWQWKSTM 236
           ++ + Y F   H WQW+ST+
Sbjct: 231 VSVLRYIFHNTHQWQWQSTV 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,872
Number of Sequences: 37544
Number of extensions: 109540
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)