Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O04
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical p...    28   2.1  
Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine n...    28   2.1  
AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho ...    28   2.1  
AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-...    28   2.1  
AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical...    27   3.6  

>Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical
           protein C33D9.1b protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 LSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNILFLKI 289
           L+++S LYQ H+  FL +   ++   H T  + + V     FLK+
Sbjct: 342 LANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLKM 386


>Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical
           protein C33D9.1a protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 LSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNILFLKI 289
           L+++S LYQ H+  FL +   ++   H T  + + V     FLK+
Sbjct: 342 LANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLKM 386


>AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine
           nucleotide exchangefactor FGD-1 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 LSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNILFLKI 289
           L+++S LYQ H+  FL +   ++   H T  + + V     FLK+
Sbjct: 342 LANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLKM 386


>AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho
           guanine nucleotideexchange factor FGD-1 protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 LSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNILFLKI 289
           L+++S LYQ H+  FL +   ++   H T  + + V     FLK+
Sbjct: 342 LANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLKM 386


>AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-GTP
           exchange factor protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 LSHISILYQHHDL*FLLESYLAVEIDHATNTVPSFVSSNILFLKI 289
           L+++S LYQ H+  FL +   ++   H T  + + V     FLK+
Sbjct: 342 LANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLKM 386


>AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical
           protein Y39A1A.21a protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -3

Query: 230 RFPLPNMIP---EETIGHGVDTVWKY 162
           RFPLP       E  IG G+D VW Y
Sbjct: 160 RFPLPENDAWKLEHQIGEGIDAVWVY 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,574,983
Number of Sequences: 27780
Number of extensions: 116043
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)