Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O04
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/20 (35%), Positives = 8/20 (40%)
 Frame = +3

Query: 195 SFFWNHIWQWKSTMQLIQYH 254
           S FW   WQW    +    H
Sbjct: 166 SVFWGSAWQWNEERKQYYLH 185


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 215 LAVEIDHATNTVPSFVSSNI 274
           +A  IDHA NT+  + ++++
Sbjct: 417 IAQNIDHAKNTIIDYRNNDL 436


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 124 LNFSTIYCYFFITYFHTV 177
           LNF+  Y    +TY HT+
Sbjct: 56  LNFNLNYVNKGVTYKHTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,658
Number of Sequences: 438
Number of extensions: 1402
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)