Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O04
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    29   1.1  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    27   2.5  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    27   4.4  
At2g27770.1 68415.m03365 expressed protein                             26   5.9  
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ...    26   7.7  

>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 224 PLPNMIPEETIGHGVDTVW 168
           PLP  +P   +GH +DT W
Sbjct: 100 PLPKQLPIHRVGHTIDTSW 118


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 222 TAKYDSRRNYRSWC*YSMEICDKEIAINCR 133
           T K       +SWC + +EIC ++   N R
Sbjct: 824 TLKSQGHDGIKSWCLFVLEICSEDTGANVR 853


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 61  F*FNYYTFDKARMLTFQ**KALNFSTIYCYFFITYFHTVSTP 186
           F F +Y F     + F       +ST+Y  F IT F+ ++TP
Sbjct: 350 FTFFFYCFILPTSVFFPEVNIPTWSTVYFPFMITLFNAIATP 391


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 264 DTNDGTVLVAWSISTAKYDS 205
           D++ G + V W +S+AKYDS
Sbjct: 111 DSDLGKIEVFWDLSSAKYDS 130


>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 589

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 268 RRYK*WYCISCMVDFH--CQI*FQKKL 194
           RR+  +YCI+C V FH  C I F +KL
Sbjct: 44  RRFS-YYCITCDVSFHKGCHI-FPRKL 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,951,530
Number of Sequences: 28952
Number of extensions: 98888
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)