Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O03
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 150 1e-37
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.054
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.094
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 2.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 4.7
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.1
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 6.1
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 6.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.1
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 8.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 8.1
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 24 8.1
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 24 8.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 8.1
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 150 bits (363), Expect = 1e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 3 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVF 182
Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VF
Sbjct: 76 QARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVF 133
Query: 183 PAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
P EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 134 PTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.054
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 135 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 311
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 312 KLTGREVTFEFP 347
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.094
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 48 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 227
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 228 SQLIKVHLD-KNQQTTIEHKV 287
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 245 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 111
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 81 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 206
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 319 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 191
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 319 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 191
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 165 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 73
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 6.1
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 18 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 197
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 198 GKRIRV 215
G IR+
Sbjct: 167 GVDIRL 172
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 319 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 191
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 319 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 191
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 268 VCWFLSRCTLMSCEPSSF 215
+ WFLSR + + PSSF
Sbjct: 3 ISWFLSRFRIRTVAPSSF 20
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 246 HLDKNQQTTIEHKVDTFQSV 305
H+D NQQT ++H+ F+SV
Sbjct: 967 HID-NQQTLLQHRNQWFESV 985
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 333 SLRAPSTSCIQTGRCQPCV 277
+L AP SCI T + +PC+
Sbjct: 355 ALSAPYESCIVTKKPEPCI 373
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 125 PFLFVGYTCLVAGLGQDLTVTNEHNM 48
P ++VGY VAG+G + V +M
Sbjct: 424 PLIYVGYISCVAGMGAMICVNATTSM 449
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 274 IVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNM 161
I V W C+L P F+L +L IS N R M
Sbjct: 1173 IEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRM 1210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,889
Number of Sequences: 5004
Number of extensions: 34489
Number of successful extensions: 133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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