Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O03
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 134 2e-32
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 132 8e-32
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 59 1e-09
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 0.64
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 0.84
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.1
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 29 1.1
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885... 28 3.4
06_01_0793 - 5918912-5919793,5919830-5920285 27 5.9
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 27 5.9
07_01_0755 - 5806614-5806939,5807039-5809415 27 7.8
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 7.8
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 134 bits (325), Expect = 2e-32
Identities = 63/114 (55%), Positives = 89/114 (78%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+P
Sbjct: 78 VRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYP 133
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 132 bits (320), Expect = 8e-32
Identities = 62/114 (54%), Positives = 86/114 (75%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+P
Sbjct: 91 VRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYP 146
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKR+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 59.3 bits (137), Expect = 1e-09
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLV+ELEKKFSGK VVF R+I+ +P +K + PR+RTL +V+D ILED+V
Sbjct: 63 VRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQ 118
Query: 186 AEIVG 200
++G
Sbjct: 119 LRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 0.64
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 121 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 5
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 177 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 284
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 126 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 242
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 29.5 bits (63), Expect = 1.1
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = -1
Query: 313 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 134
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 133 ERGLFCLLATRVLWLGLG 80
GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
>02_02_0312 +
8855664-8855807,8856402-8856465,8858399-8858547,
8859258-8859674
Length = 257
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 335 SHFAPRQLLVYRLEGVNLVFNS 270
+H A +++L ++GVNLVFNS
Sbjct: 59 AHCASKEILSSSIDGVNLVFNS 80
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 7 SGLSVS*KRSSAVSMLCSLVTVRSCP 84
SG+SV+ KR S C+L +RSCP
Sbjct: 166 SGMSVA-KRCSLAMERCTLAAMRSCP 190
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 138 SWNGAFSVCWLHVSCGWAWAGSYG 67
S G +CW+H + GW A +G
Sbjct: 146 SGGGVQDLCWIHHASGWLLASIHG 169
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -2
Query: 171 LPIWRHIQKSV--SWNGAFSVCW--LHVSCGWAWAGSYGHQRTQHAYR 40
+P++ QKS S++G +C L V CG + SYG + +YR
Sbjct: 496 IPVFAPFQKSAASSFSGNTKLCGNPLVVDCGPIYGSSYGMDHRKISYR 543
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 183 PAEIVGKRIRVKLDG-SQLIKVHLDK 257
PA +VG+R+ VKL G +L K +DK
Sbjct: 10 PAAVVGERVAVKLRGYFELAKEEIDK 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,005
Number of Sequences: 37544
Number of extensions: 235959
Number of successful extensions: 692
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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