Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O03
(415 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 66 4e-24
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.093
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 31 0.50
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06) 29 1.1
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 27 4.6
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 27 6.1
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40) 27 6.1
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 65.7 bits (153), Expect(2) = 4e-24
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +3
Query: 3 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 134
Q RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 78 QTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 62.5 bits (145), Expect(2) = 4e-24
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +3
Query: 246 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 33.1 bits (72), Expect = 0.093
Identities = 18/81 (22%), Positives = 40/81 (49%)
Frame = -1
Query: 343 NSKVTSRPVNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSN 164
++++ + + ++T + T ++V C + C + S T++ +P TRS N
Sbjct: 34 SNEIVAVTLTTIFTCVTIVTCATVVTCVTVITCVTVIAYVSGLTVLLMPV-----TRSRN 88
Query: 163 MASYTEVSVLERGLFCLLATR 101
M+ + + +L RGLF + +
Sbjct: 89 MSRVSVLRLLSRGLFLTITNQ 109
>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 185
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 129 GAFSVCWLHVSCGWAWAGSYGH 64
GAF VCWL S G +W + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126
>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
Length = 416
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = -1
Query: 364 IYK*GSGNSKVTSRPVNFLYTD-WKVSTLCSIVVC-------WFLSRCTLMSCEPSSFTL 209
+Y+ G+G + N +YT WKV+++CSI C W L + L E S++
Sbjct: 128 VYRTGAGAGGLA---FNLIYTGKWKVASICSIPFCCLPLLSYWLLDKRPLQ--ESDSYSG 182
Query: 208 MRLPTISAGNTRSSNMAS 155
++ + ++++N++S
Sbjct: 183 VKYTKVDEKESQNNNLSS 200
>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 28.3 bits (60), Expect = 2.6
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -3
Query: 344 ELESHFAPRQLLVYRLEGVNLVFNSCLLVFV*MHFDEL*AIELHSDAFANNLGREYQIFQ 165
E E F + LVY +GV+ VF L + + F AI L A LG +++
Sbjct: 158 EKEPKFNAKSSLVYDPDGVHQVFLVLLFLTIIGEFFSAPAITLADSATLGVLGENKELYG 217
Query: 164 YGVIYRSQCPGTGPFL 117
++ S GT FL
Sbjct: 218 RQRLWGSLGWGTAMFL 233
>SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 283 LCSIVVCWFLSRCTLMSCE--PSSFTLMRLPTISAGNTRSSN 164
+CS V+ W L ++SC+ P + R+P+IS N R N
Sbjct: 41 ICSAVIAWSLIIVLVVSCKWHPVGIS-KRIPSISCDNKRCFN 81
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -1
Query: 256 LSRCTLMSCEPSSFTLMRLPTISA----GNTRSSNMASYTEVSVLERGLF--CLLATRVL 95
LSR + C+PSS +R+ ++A GN+ SN+ + E+ L + R L
Sbjct: 868 LSRKVTVHCQPSSVYRVRILALTADPTIGNSEPSNLLTICTPGSPEKSLVPKQQIRLRSL 927
Query: 94 WLGLGRI 74
W G RI
Sbjct: 928 WTGNERI 934
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 114 KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTI 275
K+KRP ++DAI F G + KLD L + D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852
>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 215 EARWLTTHQSASRQKPTDNY 274
E+R TTHQ +S + PTD Y
Sbjct: 152 ESRTSTTHQKSSLRSPTDYY 171
>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
Length = 406
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 147 KSVSWNGAFSVCWLHVSCGWAWA 79
K ++GA + CWL V G WA
Sbjct: 260 KGYGYHGAQTACWLSVDNGLIWA 282
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 66 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 173
D I+P P H+T N +K L S+ D +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 331 TSRPVNFLYTDWKVSTLCSIVVCWFLSRCTLMS 233
T+R + ++DW ++ C CW +S T+ S
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,139
Number of Sequences: 59808
Number of extensions: 284802
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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