Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O03
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.34 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.34 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +3

Query: 141 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 311
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +3

Query: 141 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 311
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 141 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 311
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = -2

Query: 162 WRHIQKSVSWNGAFSVCWLHV 100
           WRH    + W   F V + ++
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYI 421


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 141 VSWNGAFSVCWLHVSC 94
           + WN AF++    +SC
Sbjct: 509 IRWNSAFAIAPAVISC 524



 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 133 ERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNF 32
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 552 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 585


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 129 GAFSVCWLHVSCGWAWAG 76
           G F +CWL       W+G
Sbjct: 342 GVFIICWLPFFVVNLWSG 359


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 141 VSWNGAFSVCWLHVSC 94
           + WN AF++    +SC
Sbjct: 599 IRWNSAFAIAPAVISC 614



 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 133 ERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNF 32
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 642 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 675


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 325 RPVNFLYTDWKVSTLC 278
           RP N+L     VS LC
Sbjct: 74  RPCNYLLVSLAVSDLC 89


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 164 IGRSGIPGRDCWQTHQSEAR 223
           +G  G     CW  HQS  R
Sbjct: 317 VGLVGNSAVGCWNEHQSLQR 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,723
Number of Sequences: 438
Number of extensions: 2590
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)