Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O03
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 136 4e-33
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 136 4e-33
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 133 5e-32
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 131 2e-31
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 131 2e-31
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 0.54
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 28 2.2
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 3.8
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 27 6.6
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne... 26 8.7
At1g48880.1 68414.m05476 hypothetical protein 26 8.7
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 136 bits (330), Expect = 4e-33
Identities = 66/114 (57%), Positives = 89/114 (78%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V P
Sbjct: 78 VRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLP 133
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 136 bits (330), Expect = 4e-33
Identities = 66/114 (57%), Positives = 89/114 (78%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V P
Sbjct: 78 VRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLP 133
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 133 bits (321), Expect = 5e-32
Identities = 64/113 (56%), Positives = 86/113 (76%)
Frame = +3
Query: 9 RLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPA 188
RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPA
Sbjct: 79 RLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPA 134
Query: 189 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
EIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 135 EIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 131 bits (316), Expect = 2e-31
Identities = 62/114 (54%), Positives = 87/114 (76%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +P
Sbjct: 78 LRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYP 133
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 131 bits (316), Expect = 2e-31
Identities = 62/114 (54%), Positives = 87/114 (76%)
Frame = +3
Query: 6 IRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 185
+RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +P
Sbjct: 78 LRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYP 133
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 347
AEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 0.54
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 198 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 106
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 283 LCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLERGLFC 116
+C WF C M+ E + TL LP+ + + +S +S+++V+ LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 186 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 305
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 256 LSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVS 140
LSR S FTL ++P I +G T S +S +E+S
Sbjct: 37 LSRFPSFGFSGSDFTLDQIPAIFSGYTAESEDSSSSEMS 75
>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
nearly identical to SP|P35510
Length = 725
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 201 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 332
+++R + LI +KN T+I HK+ F+ K + +EV
Sbjct: 600 QKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEV 643
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 15 VRELEKKFSGKHVVFVGD 68
VR++ K+ GK +VFVGD
Sbjct: 172 VRDVLKRLRGKRIVFVGD 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,020,017
Number of Sequences: 28952
Number of extensions: 187713
Number of successful extensions: 561
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -