Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O01
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    45   9e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    45   9e-06
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    45   9e-06
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    44   2e-05
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    44   2e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    31   0.12 
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    31   0.21 
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    30   0.37 

>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
 Frame = +3

Query: 348 KALPCIVDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQT-DIKRYDLMHNIN 524
           K L   +DV + K ++ A  DA ++F  +DI++NNA    L G  ++ +I+      N+N
Sbjct: 48  KLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNA-GYGLVGEFESYNIEEMHRQMNVN 106

Query: 525 TRGTFLASKLCLPVLKSSNH-AHILNLSPPLNMNPY-WFSIHVAYTMAKYGMSMCVLR 692
             G    +K  L +++ S     IL +S      P    S++ A   A  G+S  ++R
Sbjct: 107 FWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMR 164


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +3

Query: 351 ALPCIVDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQTDIKRYDLMHNINTR 530
           AL    DV +  QI+ AI+  ++    ID+L+NNA     T   Q   + +D   ++  R
Sbjct: 47  ALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLR 106

Query: 531 GTFLASKLCLP-VLKSSNHAHILNLSPPLNMNPYWFSIHVAYTMAKYGM 674
           G +L  +  +P + K      I+N+    ++N + +    AY+ AK G+
Sbjct: 107 GNYLTQRYVIPHMAKQGKGGSIVNIG---SVNGHIYLGSPAYSAAKAGL 152


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
 Frame = +3

Query: 168 KLAGRTLFITGASRXXXXXXXXXXXXXXX-NVVIAAKTAEPHPKLPXXXXXXXXXXXXXX 344
           +L G+T+ ITGAS                  +++AA+      +                
Sbjct: 3   RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAAR------RFSTVEEIAKELESKYE 56

Query: 345 XKALPCIVDVREEKQIQKAIDDAVKKFNGIDILVNNAS-AISLTGTSQTDIKRYDLMHNI 521
              LP  +DV + K I   I+   K+F  ID+L+NNA  A+        +I     M   
Sbjct: 57  VSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITT 116

Query: 522 NTRGTFLASKLCLPVLKSSNHAHILNL 602
           N  G    ++  LP+  S N   ILN+
Sbjct: 117 NVLGMMAMTRAVLPIFYSKNKGDILNV 143


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +3

Query: 366 VDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQTDIKRYDLMHNINTRGTFLA 545
           +DV     I+K+++ A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 546 SKLCLPVLKSSNHAHILNLS 605
            K   P+ +S ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +3

Query: 366 VDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQTDIKRYDLMHNINTRGTFLA 545
           +DV     I+K+++ A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 546 SKLCLPVLKSSNHAHILNLS 605
            K   P+ +S ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 402 IDDAVKKFNGIDILVNNASAISLT-GTSQTDIKRYDLMHNINTRGTFLASKLCLPVLKSS 578
           +D A+KK   ID+LVNN +   +       D +++DL    N    F  +K  +  +KS 
Sbjct: 112 VDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSG 171

Query: 579 N 581
           +
Sbjct: 172 S 172


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 627 TDSYSEAVTGSICERDYCSLIPEDIISTLRTSL 529
           TDS    +TG  C  D C L PE+ +S+L+T+L
Sbjct: 192 TDSNPMTLTGMACA-DICLLRPEEALSSLKTAL 223


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 27/134 (20%), Positives = 51/134 (38%)
 Frame = +3

Query: 171 LAGRTLFITGASRXXXXXXXXXXXXXXXNVVIAAKTAEPHPKLPXXXXXXXXXXXXXXXK 350
           L G+   +TG+S                 V +A +  E + K+                +
Sbjct: 40  LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLR 99

Query: 351 ALPCIVDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQTDIKRYDLMHNINTR 530
                +D+ + + + +A +  + K   + ILVNNA  ++       D   Y+L    N  
Sbjct: 100 -----LDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKD--GYELQIQTNYL 152

Query: 531 GTFLASKLCLPVLK 572
             +L ++L LP L+
Sbjct: 153 SHYLFTELLLPTLR 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,184
Number of Sequences: 5004
Number of extensions: 57609
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)