Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O01
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    37   2e-04
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              24   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
 Frame = +3

Query: 348 KALPCIVDVREEKQIQKAIDDAVKKFNGIDILVNNASAISLTGTSQTD-IKRYDLMHNIN 524
           K +P   D+  +  I K I+   K    IDIL+NNA+ I++  T Q D +  +  + +IN
Sbjct: 57  KLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNAT-INIDVTLQNDEVLDWKKIFDIN 115

Query: 525 TRGTFLASKLCLPVLKSS--NHAHILNLSPPLNMN 623
             G     +  L ++K    N+  I+N++    +N
Sbjct: 116 LLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLN 150


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 VDVREEKQIQKAIDDAVKKFNGID 437
           +DV +EK +Q   +  +KKFNG D
Sbjct: 52  IDVEDEK-VQLFSECLIKKFNGYD 74


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 256 TLSLPPKLQNPIQNFQALF 312
           T  LP K  NP+Q  +ALF
Sbjct: 16  TSPLPRKPVNPVQELKALF 34


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 439 MSIPLNFFTASSIAFWICFSSLTSTI 362
           + + ++FF       WI F+ L+ TI
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTI 131


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 439 MSIPLNFFTASSIAFWICFSSLTSTI 362
           + + ++FF       WI F+ L+ TI
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTI 131


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 439 MSIPLNFFTASSIAFWICFSSLTSTI 362
           + + ++FF       WI F+ L+ TI
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDTI 131


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 296 FWMGFCSFGGNDNVGTIFRR 237
           FW+G+C+   N  +  +F +
Sbjct: 48  FWLGYCNSAINPCIYALFSK 67


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 296 FWMGFCSFGGNDNVGTIFRR 237
           FW+G+C+   N  +  +F +
Sbjct: 496 FWLGYCNSAINPCIYALFSK 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,287
Number of Sequences: 438
Number of extensions: 4330
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)