Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N24
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   164   9e-42
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   159   3e-40
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   3.2  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   5.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.6  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   9.6  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  164 bits (398), Expect = 9e-42
 Identities = 79/100 (79%), Positives = 86/100 (86%)
 Frame = +1

Query: 1   PHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYD 180
           P  I W  +GAEYV+ESTGVFTT + ASAHL GGAK+VIISAPS DAPMFVVGVNLE ++
Sbjct: 82  PANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFN 141

Query: 181 PSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHAT 300
           PS KVISNASCTTNCLAPLAKVI+D F I EGLMTTVHAT
Sbjct: 142 PSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHAT 181



 Score =  109 bits (261), Expect = 3e-25
 Identities = 53/74 (71%), Positives = 57/74 (77%)
 Frame = +3

Query: 306 ATQKTVDGPSGKLWRDGRGAQQNFIPVSTGAVKAVGKVFPQFIGKLTGMASRVPVANVSV 485
           ATQKTVDGPS K WR GRGA  N IP STGA KAVGKV P   GKLTGMA RVP  +VSV
Sbjct: 183 ATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSV 242

Query: 486 VDLTVRLGKPVSYK 527
           VDLTV+L KP +Y+
Sbjct: 243 VDLTVKLAKPTNYE 256


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  159 bits (385), Expect = 3e-40
 Identities = 76/100 (76%), Positives = 85/100 (85%)
 Frame = +1

Query: 1   PHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYD 180
           P  I W  +GA+YV+ESTGVFTT + ASAHL GGAK+VIISAPS DAPM+VVGVN E ++
Sbjct: 82  PADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFN 141

Query: 181 PSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHAT 300
           PS KVISNASCTTNCLAPLAKVI+D F I EGLMTTVHAT
Sbjct: 142 PSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHAT 181



 Score =  109 bits (261), Expect = 3e-25
 Identities = 53/74 (71%), Positives = 57/74 (77%)
 Frame = +3

Query: 306 ATQKTVDGPSGKLWRDGRGAQQNFIPVSTGAVKAVGKVFPQFIGKLTGMASRVPVANVSV 485
           ATQKTVDGPS K WR GRGA  N IP STGA KAVGKV P   GKLTGMA RVP  +VSV
Sbjct: 183 ATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSV 242

Query: 486 VDLTVRLGKPVSYK 527
           VDLTV+L KP +Y+
Sbjct: 243 VDLTVKLAKPTNYE 256


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 464 DTGSHTSKLSNKLWKDFADSFNSASGNRDKVLLSPTAIAPQFSRR-SINSLLG 309
           D    + K + K W++  +   S   N+D  LL      P+F+R  S  S+ G
Sbjct: 3   DIDKESLKQNQKQWENEVELGESREANQDDELLMSLGYKPEFTREFSYVSIFG 55


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +2

Query: 308 HPEDC*WTFWKTVARW 355
           +P+D  W +W++++ W
Sbjct: 91  NPKDVFWVYWRSISEW 106


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 436 ESLLVWLPVSLSQMFQWWTLLSVSVNLLATKHLT 537
           E   V +PVSL  +F  W LL  S  LL  +H+T
Sbjct: 614 EWFAVSIPVSLLCIFSIWFLL--SFGLLKDEHIT 645


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 497 SKVHH*NICDRDTGSHTSKLSNKLWKDFADS 405
           S +HH  I   D G++   +  +L KD A S
Sbjct: 87  SSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,722
Number of Sequences: 5004
Number of extensions: 53348
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)