Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N24
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 9e-42
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 31 0.46
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 29 3.3
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 5.7
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 27 7.6
SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06) 27 7.6
SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24) 27 7.6
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 27 7.6
SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 166 bits (404), Expect = 9e-42
Identities = 77/99 (77%), Positives = 85/99 (85%)
Frame = +1
Query: 1 PHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYD 180
P IPWG+ GA+YVVESTGVFTT +KA HL GGAKKVIISAPSADAPMFV+GVN E YD
Sbjct: 855 PTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYD 914
Query: 181 PSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHA 297
PS V+SNASCTTNCLAPL KVI+DNF + EGLMTT+HA
Sbjct: 915 PSMTVVSNASCTTNCLAPLVKVINDNFGLEEGLMTTIHA 953
Score = 118 bits (284), Expect = 3e-27
Identities = 57/74 (77%), Positives = 60/74 (81%)
Frame = +3
Query: 306 ATQKTVDGPSGKLWRDGRGAQQNFIPVSTGAVKAVGKVFPQFIGKLTGMASRVPVANVSV 485
ATQKTVDGPS K WRDGRGA QN IP STGA KAVGKV P+ GKLTGMA RVPVA+VSV
Sbjct: 956 ATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPEVNGKLTGMAFRVPVADVSV 1015
Query: 486 VDLTVRLGKPVSYK 527
VDLT RL KP Y+
Sbjct: 1016 VDLTCRLKKPAKYE 1029
>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
Length = 731
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 363 PHGHRATVFQKVHQQSSGWQVSG---MHCSHQTFNNFKVVVDDLCEGCE 226
P R FQ HQ + Q+ + C+H +N +K + D LC+GCE
Sbjct: 486 PETVRRLPFQHFHQAAGAVQIPSEVKIVCNHFMYN-YKKIPDFLCKGCE 533
>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 363 PHGHRATVFQKVHQQSSGWQVSG---MHCSHQTFNNFKVVVDDLCEGCE 226
P R FQ HQ + Q+ + C+H NN K + D LC+GCE
Sbjct: 409 PETVRRLPFQHFHQAAGAVQIPSEVKIVCNH-FMNNCKKIPDFLCKGCE 456
>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
Length = 1060
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 73 DKASAHLVGGAKKVIISAP--SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 246
D+ S H V A V P +A+ +FV + YDP+ + ++ S + LAP + V
Sbjct: 20 DRISKHGVQSAPAVFGQRPVSNANGTLFVRRFQMFRYDPNIAITTHGSSKKSGLAPASSV 79
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 114 NHLRTKC*CSHVCSWCQPG 170
+HLR+KC + +CS CQ G
Sbjct: 683 DHLRSKCPSTRLCSKCQSG 701
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 169 EAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATYLP 309
EAY PSY+ I+N + + L +A N+ I GL+ + + Y P
Sbjct: 472 EAY-PSYRPITNVAFLSKTLERVAANQTMNYLIPNGLLAKLQSAYRP 517
>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
Length = 768
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 169 EAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATYLP 309
EAY PSY+ I+N + + L +A N+ I GL+ + + Y P
Sbjct: 469 EAY-PSYRPITNVAFLSKTLERVAANQTMNYLIPNGLLAKLQSAYRP 514
>SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)
Length = 568
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 169 EAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATYLP 309
EAY PSY+ I+N + + L +A N+ I GL+ + + Y P
Sbjct: 343 EAY-PSYRPITNVAFLSKTLERVAANQTMNYLIPNGLLAKLQSAYRP 388
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 169 EAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATYLP 309
EAY PSY+ I+N + + L +A N+ I GL+ + + Y P
Sbjct: 471 EAY-PSYRPITNVAFLSKTLERVAANQTMNYLIPNGLLAKLQSAYRP 516
>SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 360 HGHRATVFQKVHQQS--SGWQVSGMHCSHQTF 271
HG+ A VF ++H++ S W +SG+ Q +
Sbjct: 13 HGYLALVFDEIHREDDFSAWTISGVGRHQQEY 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,516
Number of Sequences: 59808
Number of extensions: 436441
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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