Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N23
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 29 3.1
11_06_0126 - 20378611-20379719,20380081-20381239 29 4.1
10_07_0193 - 13954819-13954950,13955340-13955375 29 4.1
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 28 5.4
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211... 28 7.1
11_01_0104 - 781471-781888,781994-782101,782195-782511 27 9.4
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641... 27 9.4
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 9.4
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 27 9.4
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 304 KNILEKGFDTTGTGFKSIE--SWWYKSRLGFP 393
+NI GF+ + +SIE S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261
>11_06_0126 - 20378611-20379719,20380081-20381239
Length = 755
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -2
Query: 596 ESRHIISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRV 417
+S + LS+ N G + TL +YL+ + D+S + + + +G + ++ + P +
Sbjct: 639 QSLESLELSRNNLSGEIPS-TLSNLSYLSNL-DLSYNNLSGTIPSGSQLGTLYM-EHPDM 695
Query: 416 PRGNRSLCGKPRR 378
GN LCG P R
Sbjct: 696 YNGNNGLCGPPLR 708
>10_07_0193 - 13954819-13954950,13955340-13955375
Length = 55
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 434 GKPPRVPRGNRSLCGKPRRLLYH 366
G+ PR+PR LC P R +YH
Sbjct: 19 GRLPRLPRHQEFLCFHPHRRVYH 41
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 515 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 420
+A +VD ++G P + G+ T + G PP+
Sbjct: 71 VAGVVDFPVEGSANPFMVGLYFTRVKLGSPPK 102
>05_07_0291 -
29020032-29020660,29020747-29020817,29021020-29021194,
29021451-29021571,29021686-29022036
Length = 448
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 500 DISIDGKTIPVLTGVTMTNIW 438
D S D +PV+ GVT+ N+W
Sbjct: 360 DASYDPSKLPVVDGVTIKNVW 380
>11_01_0104 - 781471-781888,781994-782101,782195-782511
Length = 280
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 160 MGRLMSINDKRLDMLEIDSFVYKLDT---GKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 330
+G ++S +DK + MLE+ KL GK + S++ H + E+ + + K +
Sbjct: 51 LGDILSCSDKAISMLELGGDTKKLTNLVGGKRKGDKHSMDNHNLEEEAKESVSKRRKNAE 110
Query: 331 TTGT 342
TG+
Sbjct: 111 HTGS 114
>05_04_0032 +
17363039-17363436,17363626-17363936,17364058-17364120,
17364697-17365181,17365772-17366122
Length = 535
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 19 QKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD---AVVRIFIGPKYDCMGRLMSINDK 189
QK ++ M + R +HQ K ++ +D AVV G DC+ M ND
Sbjct: 325 QKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDA 384
Query: 190 RLDMLEID--SFVYKLDTGKNNIVRSS 264
+ D ++ D ++ GK+N + ++
Sbjct: 385 QEDAVQSDLNGITIEMFCGKDNFLTNA 411
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 341 VPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 231
VP + + + V LC PC+ + +T++F+ +S
Sbjct: 717 VPFRNSKLTYLLQVSDLCKWMPCLGGDSKTLMFVNIS 753
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 453 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALETCSS 334
D ++ E+ G R +KPV + AT PP+ A S+
Sbjct: 113 DSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAASN 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,059,132
Number of Sequences: 37544
Number of extensions: 350700
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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