Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N23
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 33 0.21
At5g55210.1 68418.m06882 expressed protein similar to unknown pr... 30 1.5
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 1.5
At2g05645.1 68415.m00604 hypothetical protein 30 1.5
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 2.0
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 2.0
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 28 4.5
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 4.5
At5g10710.2 68418.m01241 expressed protein 28 6.0
At5g10710.1 68418.m01240 expressed protein 28 6.0
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 6.0
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 6.0
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 6.0
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su... 28 6.0
At5g22850.1 68418.m02671 aspartyl protease family protein contai... 27 7.9
At4g29200.1 68417.m04177 hypothetical protein 27 7.9
At3g28850.1 68416.m03599 glutaredoxin family protein 27 7.9
At2g34210.1 68415.m04186 KOW domain-containing transcription fac... 27 7.9
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 7.9
At1g50730.1 68414.m05705 expressed protein 27 7.9
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 32.7 bits (71), Expect = 0.21
Identities = 27/94 (28%), Positives = 46/94 (48%)
Frame = -2
Query: 596 ESRHIISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRV 417
+S H ++LS G +S + + A VD+S + T P+ + +++ N +
Sbjct: 219 KSLHYLNLSHNKVLGEISPNFAEKFPANA-TVDLSFNNLTGPIPSSLSLLN----QKAES 273
Query: 416 PRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFS 315
GN+ LCGKP ++L S L P P +S+ S
Sbjct: 274 FSGNQELCGKPLKILCSIPSTLSNP-PNISETTS 306
>At5g55210.1 68418.m06882 expressed protein similar to unknown
protein (pir||T04913)
Length = 168
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 224 INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 370
+ S L RT+S + TA+ S R R K W +VST V RAS+ G
Sbjct: 4 VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 527 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 423
RQ+ + +VD + G + P L G+ T + G PP
Sbjct: 76 RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 368 HQLSMLLKPVPVVSKPFSNMFLVHG 294
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 554 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 420
G + H +HR + L +DI + G + P G+ I G P R
Sbjct: 52 GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 545 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 420
++H Q+ + +V+ +DG + P L G+ T + G PPR
Sbjct: 54 ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 137 LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 268
L PN I+W + +LTC+ S+ SS N L + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 347 KPVPVVSKPFSNMFLVHGLCSIT 279
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At5g10710.2 68418.m01241 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -1
Query: 246 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 67
VL S F+++ I EH F + + + ++F K D V L+ +DR + +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201
Query: 66 K 64
K
Sbjct: 202 K 202
>At5g10710.1 68418.m01240 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -1
Query: 246 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 67
VL S F+++ I EH F + + + ++F K D V L+ +DR + +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201
Query: 66 K 64
K
Sbjct: 202 K 202
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 471 RYGFTIN*YVYYEGEIRLSVECMF 542
R G IN +VYYE +IR V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 137 NIRTTASTALSDITSIDTLKGW 72
NIRTT T +S I +I+ + GW
Sbjct: 109 NIRTTVGTIISVIVNIEGVSGW 130
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -1
Query: 453 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 286
DD +++ + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Query: 285 DNAVHLERAADDVVLTS 235
+ E AA D + ++
Sbjct: 169 --SAGFEPAAKDSLFSA 183
>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
subunit family protein contains Pfam profile: PF00766
electron transfer flavoprotein, alpha subunit
Length = 363
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +2
Query: 8 RLRCKRRSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMT 187
R K + + + R + ITSLSRC+S L +L + + P T++ + S+
Sbjct: 8 RALTKNKFVASNAPRSISISITSLSRCISTL----ILAEHESGTIKPQTVSTVVAANSLG 63
Query: 188 NALTCSKSIASSINSTLVRTTSSAA 262
+ + S +A S S+L S AA
Sbjct: 64 ESSSISLLLAGS-GSSLQEAASQAA 87
>At5g22850.1 68418.m02671 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 493
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 515 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 420
L ++D +DG P + G+ T + G PPR
Sbjct: 61 LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92
>At4g29200.1 68417.m04177 hypothetical protein
Length = 457
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 35 IWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCSKSI 214
I+ L C VL L CL L + + + F+++++ NT+ A N+++C+ S+
Sbjct: 399 IYCDLTCCTVL---LCLCLKALMEFKSMHFIFLFMVLGNTVCCNALIFEFLNSISCNCSM 455
>At3g28850.1 68416.m03599 glutaredoxin family protein
Length = 428
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 552 HCVETYTPPTSVSRLHSRH 496
HC Y+PP V R HS H
Sbjct: 14 HCRRGYSPPVDVQRSHSVH 32
>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
family protein
Length = 990
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 106 DKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGKNNIVRSSL 267
D V V+I +GP GRL+ + DK L +E+++ K+ TGK + R ++
Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDK-LVRVELEA---KIVTGKLHFERKAI 732
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -2
Query: 434 GKPPRVPRGNRSLCGKP--RRLLYH 366
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +2
Query: 26 RSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCS 205
RS W+TLRV + ++ LS L Q L S ++ N + + + ++C+
Sbjct: 788 RSSSWATLRVKVKIFCAIMSLLSTLSQDNLPYHSANPEIIGNELLFFGDSSYKQELVSCT 847
Query: 206 KSIASSINSTLVRTTSSAAR 265
+ + S + + + +S +R
Sbjct: 848 QLVLSELLDAIEQESSQISR 867
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,438
Number of Sequences: 28952
Number of extensions: 278286
Number of successful extensions: 830
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -