Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N22
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   1.1  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    26   3.5  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   4.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.1  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   6.1  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = -3

Query: 285 AVVSADHHHPIPGLHIVMFLPETGTVYRHF---EFILTEEVLYA 163
           AV+   HHHP P   I    P    + R     +FI  E+  YA
Sbjct: 235 AVIGFYHHHPFPSSEIARCFPRRRAILRSVLGADFIGFEDYSYA 278


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 58  WSDGRPIENYFLDAANELIRADRRAKEYCRSNTRHRIKYLFGE 186
           W   R    Y     + ++R ++  +EY R N R+R K   GE
Sbjct: 35  WETARVELEYSSIQLDSVLRYEKAVQEYIRLNRRYRNKIASGE 77


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 353 GHTRTTNLC*PGSPTYLGKRYGSWAKRLCDD--VNEVILTVPE 475
           G     N C P +  Y G ++G WA +L D   V+   LT PE
Sbjct: 92  GSNVDVNKCCPWAQCYGGYQFGDWAGQLGDGRVVSLCELTNPE 134


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 474 SGTVRITSFTSSQSLLAQLPYLLPKYVGEPGQHKFVVLVCPFRTVNV 334
           S +V+ T +  + +++   P +   Y   P +H F + + PF   N+
Sbjct: 226 SESVQATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPFNIDNL 272


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 77   LRTIS*MPQMSLSEQTDVRRNTAVVTLGI 163
            L  I  + QM+ S+Q DV+ N   V LG+
Sbjct: 1024 LEEIKNLEQMAYSKQHDVKSNPVAVELGL 1052


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 210  VYRHFEFILTEEVLYAMPSVTTAVF 136
            +  HF+FIL  E     P   TAV+
Sbjct: 1355 ILEHFDFILDTEAASTFPKSITAVY 1379


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 295 QMFSDVRVVPQYLNVYRSKWAYENNEFVLTRFP 393
           Q+F +   V + LN  R+++ +E ++FVL   P
Sbjct: 436 QLFENNDSVTRLLNFARARFPFEYSQFVLLLIP 468


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 100 ANELIRADRRAKEYCRSNTRHRIKYLFGENEFKMA 204
           AN LI   +   +    +  H+IK L  ENE K++
Sbjct: 289 ANSLIMEYKNELQSAEEHFSHKIKELTSENELKIS 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,330
Number of Sequences: 5004
Number of extensions: 45489
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)