Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N22
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93...    29   1.5  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    28   3.5  
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    28   4.6  
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361     27   8.1  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    27   8.1  
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817...    27   8.1  

>08_01_0116 -
           934801-934949,935745-935854,935930-936055,936439-936526,
           936638-936758,936848-936926,937093-937156,937240-937445,
           937676-937715,937748-938009
          Length = 414

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +1

Query: 49  PCHWSDGRPIENYFLDAANELIRADRRAKEYCRSNTRHRIKYLFGENEFKMAINCSGFRK 228
           P HW  G    NYF  A  +L    R    Y  +N RH I + +   +        G   
Sbjct: 294 PDHWKFGTEGNNYFRHATRQLYAVTRDLATYISAN-RH-ILHKYSNEDVSFGSWLIGLDV 351

Query: 229 KHYDVKS 249
           +H D +S
Sbjct: 352 EHVDERS 358


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 273 RSQLRFRADVLRCSSRTAVSQRLPFEMGIREQRICVDQVPL 395
           +++ ++R D+LRC S  ++       + +R+  I V  VPL
Sbjct: 559 KTKRKYRVDILRCESLASLPPATLERLFLRDYDIIVSMVPL 599


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 438 QSLLAQLPYLLPKYVGEPGQHKFVVLVCP----FRTVNVEILRYDSNIGEHLP*IAVVSA 271
           + +L++   L+  Y G PGQ+  VV+V P       V   + RY   + +H   + V+ A
Sbjct: 445 RGILSKTKALIHSYGGSPGQNVVVVVVVPDGGGIHVVTSYLARYVELLAQHAASLNVILA 504


>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
          Length = 504

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 211 CSGFRKKHYDVKSRNRVVMISAHNCDSGQMFSDV 312
           CS     H D K+  +      H+CD G++FS V
Sbjct: 149 CSKAYAVHSDYKAHLKTCGTRGHSCDCGRVFSRV 182


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 34  ACRPPPCHWSDGRP 75
           +CRPPPCH  D RP
Sbjct: 823 SCRPPPCHHHD-RP 835


>02_02_0239 -
           8177152-8177445,8177821-8178207,8178717-8179715,
           8179799-8179953,8180725-8180812,8180901-8181004,
           8181327-8181549,8182251-8182335,8182425-8182816,
           8182852-8183097
          Length = 990

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 279 QLRFRADVLRCSSRTAVSQRLPF 347
           +LR RAD L CSSR A    + F
Sbjct: 359 ELRIRADDLHCSSRKAAKHYIEF 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,899
Number of Sequences: 37544
Number of extensions: 320539
Number of successful extensions: 851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)