Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N22
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    30   0.96 
At1g35220.1 68414.m04368 expressed protein                             28   2.9  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    27   6.8  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    27   9.0  
At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprote...    27   9.0  
At3g52050.2 68416.m05709 5'-3' exonuclease family protein simila...    27   9.0  
At3g52050.1 68416.m05710 5'-3' exonuclease family protein simila...    27   9.0  
At3g24560.2 68416.m03084 expressed protein  contains Pfam profil...    27   9.0  

>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 401 LGKRYGSWAKRLCDDVNEVILTVPEAE 481
           L + YG W KR   ++ ++I +VPEAE
Sbjct: 537 LARPYGEWLKRQKIELKDIIESVPEAE 563


>At1g35220.1 68414.m04368 expressed protein
          Length = 1028

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 261 GDDQRSQLRFRADVLRCSSRTAVSQRLPFEMGIREQRICVDQVPL 395
           G   + + ++R D+LRC S  +++      +  R+  I V  +PL
Sbjct: 577 GKGNKKRKKYRVDILRCESLASLTPATLDRLFSRDYDIVVSMIPL 621


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
           aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
           GI:3172025, GI:3172044; identical to cDNA putative
           aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 177 EVLYAMPSVTTAVFLRTSVC--SDKLICG 97
           EVL   PS T   FLR++ C  S KL CG
Sbjct: 16  EVLSVNPSTTLLEFLRSNTCFKSVKLSCG 44


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 337 R*DTAVRLEHRRTSALNRSCER*SSPPDSWTSHR 236
           R +    L+H  +S+L RS E+ S  PD    HR
Sbjct: 345 RVEEVAALDHEESSSLQRSLEKCSGFPDHRLPHR 378


>At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprotein
           family protein contains Pfam domain PF04127: DNA /
           pantothenate metabolism flavoprotein
          Length = 270

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 268 ISAHNCDSGQMFSDVRV--VPQYLNVYRSKWA 357
           ++ H  +SG    D+R+  VP+ L+V RS WA
Sbjct: 151 MTEHKIESGSGPLDIRLAQVPKMLSVLRSNWA 182


>At3g52050.2 68416.m05709 5'-3' exonuclease family protein similar
           to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
           gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
           5'-3' exonuclease, N-terminal resolvase-like domain
          Length = 365

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 458 SLRLHRHKVF-WPNCHTSYPNT*GNLVNTNSLFSYAHFER*TLRYCGTTRTSE 303
           +L L+ H  F W N    +P + GNL N N         R    YC +   SE
Sbjct: 25  TLHLYHHSRFLWRNL--CFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSE 75


>At3g52050.1 68416.m05710 5'-3' exonuclease family protein similar
           to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
           gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
           5'-3' exonuclease, N-terminal resolvase-like domain
          Length = 425

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 458 SLRLHRHKVF-WPNCHTSYPNT*GNLVNTNSLFSYAHFER*TLRYCGTTRTSE 303
           +L L+ H  F W N    +P + GNL N N         R    YC +   SE
Sbjct: 2   TLHLYHHSRFLWRNL--CFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSE 52


>At3g24560.2 68416.m03084 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 660

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 37  CRPPPCHWSDGRPIENYFLDAANEL 111
           C    C W DGRP   +  +AA E+
Sbjct: 156 CEIASCDWVDGRPKLGHLQEAAREM 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,343
Number of Sequences: 28952
Number of extensions: 247087
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)