Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N21
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 29 0.62
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.62
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.5
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 3.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.3
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 5.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 5.8
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 7.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.6
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 115 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 17
+L + L+ ++WV VT + G YGY LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 376 FMTVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 269
F+ S IS ++N R Y+ I YCF Y++
Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.5
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +2
Query: 98 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 256
N N Q A + + KN S++ S + L IAS +H+ + I
Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118
Query: 257 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANK 352
+ + ++ D+ +K+R + VDL+ K
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKK 151
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 427 HFRIKHISGHNSKLII*FM 371
HF + H+ GH SKL F+
Sbjct: 72 HFHVSHVPGHASKLYFAFL 90
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 489 TTPIKRITNLVDPSSLDSSTPVCS 560
TTP T + P++++SSTP+ S
Sbjct: 363 TTPENTSTQITSPTAVNSSTPITS 386
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 425 VQNLNFGKNEEAANIINTWVEDHTNKTYHKFGGS 526
+ N+ F NE + I TW + Y + GGS
Sbjct: 128 IGNIEFHSNENSKKIEWTWSNQSLHTLYFRNGGS 161
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 1 HESHRQHEDYNNHI 42
H SHR+HE Y H+
Sbjct: 149 HGSHRRHEPYRTHL 162
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 124 TCGELIISILEYSLWVDVTGQCQGREGKYGY 32
TCG L+I I LWV++T + +G G+
Sbjct: 22 TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 462 AASSFLPKFKFCTSELNTSLDTTAN*SFNS*PLAMYTLLASLRSTPLIDLT 310
A +FL F FC + +N SLD + +YTL+ L P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 266 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGHELNDQFAVVSRDVFNSEVQNL 436
ND + +A +DL QK+ L N ++ + D+F+ R + + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,436
Number of Sequences: 5004
Number of extensions: 40186
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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