Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N21
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    37   0.010
01_06_0824 - 32243495-32244319,32244449-32244859                       34   0.067
01_01_1152 + 9170628-9171899                                           32   0.27 

>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +2

Query: 227 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGHELNDQFAVV 400
           + HD LLK+    NDN+TK    + NQ +  +  KG D K  +KV        N+Q   +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525

Query: 401 S--RDVFNSEVQNLNFGKNEEAANI 469
           +  R  FN+E++N + G +E  + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
 Frame = +2

Query: 155 DKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN--------DNVTKAVFTDLNQK 310
           DK++ +S  S+   LA L   + GE+ D+++  +             +V      D +  
Sbjct: 31  DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90

Query: 311 VRSIKGVDLKLANKVYIANGHELNDQFAVVSRDVFNSEVQNLNF-GKNEEAANIINTWVE 487
                G  ++ AN V++     L   +A V  D + +E + ++F  K EEA   IN W E
Sbjct: 91  GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150

Query: 488 DHT 496
             T
Sbjct: 151 SAT 153


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +2

Query: 158 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 334
           ++ I+S  S    LA +A  + GE+  ELL  +  P+   + ++  T L  ++R +   +
Sbjct: 59  RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLP--N 116

Query: 335 LKLANKVYIANGHELNDQFAVVSRDVFNSEVQNLNFG-KNEEAANIINTWVEDHT 496
              A  V++  G  L  +FA  +   + +  +  +F  + E+A   +N +V D T
Sbjct: 117 TSFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDAT 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,265
Number of Sequences: 37544
Number of extensions: 224959
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)