Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N21
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62170.1 68414.m07013 serpin family protein / serine protease...    40   0.002
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    38   0.006
At1g64030.1 68414.m07252 serpin family protein / serine protease...    34   0.075
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    32   0.30 
At2g14540.1 68415.m01628 serpin family protein / serine protease...    32   0.30 
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    31   0.40 
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    29   1.6  
At2g34250.1 68415.m04190 protein transport protein sec61, putati...    28   4.9  
At1g29310.1 68414.m03583 protein transport protein sec61, putati...    28   4.9  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   6.5  
At2g43340.1 68415.m05389 expressed protein                             27   8.6  

>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
 Frame = +2

Query: 68  SDIDPQRVLKNGNDQ--FTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDE 241
           S+ID    +K  ND   F   +    V KN   + + S  S+   L  +A +S GE  +E
Sbjct: 60  SNIDVGEAMKKQNDVAIFLTGIVISSVAKN--SNFVFSPASINAALTMVAASSGGEQGEE 117

Query: 242 LLKAI-DFPNDNVTKAVFTDLNQKVRSIKGVD--LKLANKVYIANGHELNDQFAV--VSR 406
           L   I  F   + T  +   + +++ S+  VD   K   K+ + NG  ++   +V  +S+
Sbjct: 118 LRSFILSFLKSSSTDEL-NAIFREIASVVLVDGSKKGGPKIAVVNGMWMDQSLSVNPLSK 176

Query: 407 DVF----NSEVQNLNF-GKNEEAANIINTWVEDHTN 499
           D+F    ++    ++F  K EE    +N W   HTN
Sbjct: 177 DLFKNFFSAAFAQVDFRSKAEEVRTEVNAWASSHTN 212


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
 Frame = +2

Query: 161 SVILSAFSVMIPLAQLAIASTGESHDELLKAI-----DFPNDNVTKAVFTDLNQKVRSIK 325
           +++ S  S+ + L  +A  S   + +++L  I     D+ N  + K V   LN  +    
Sbjct: 30  NLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVSVALNDGMER-S 88

Query: 326 GVDLKLANKVYIANGHELNDQFAVVSRDVFNSEVQNLNFG-KNEEAANIINTWVEDHTN 499
            + L  A  V+I         F  +  + +N+    ++F  K  E  N +N W E HTN
Sbjct: 89  DLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWAEVHTN 147


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
 Frame = +2

Query: 74  IDPQRVLKNGNDQFTARMFNEVVKKNP-DKSVILSAFSVMIPLAQLAIASTGES-HDELL 247
           +D +  +KN        +   V+   P D +VI S  S+   +   A    G+    ++L
Sbjct: 1   MDVREAMKN-QTHVAMILSGHVLSSAPKDSNVIFSPASINSAITMHAAGPGGDLVSGQIL 59

Query: 248 KAIDFPNDNVTKAVFTDLNQKVRSIK----GVDLKLANKVYIANGHELNDQFAVVSRDVF 415
             +   + +  K VF +L   V + +    G  +  AN ++I      + +F  +  + F
Sbjct: 60  SFLRSSSIDELKTVFRELASVVYADRSATGGPKITAANGLWIDKSLPTDPKFKDLFENFF 119

Query: 416 NSEVQNLNF-GKNEEAANIINTWVEDHTN 499
            +    ++F  + EE    +N+WVE HTN
Sbjct: 120 KAVYVPVDFRSEAEEVRKEVNSWVEHHTN 148


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 110 QFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGE-SHDELLKAIDFPNDNVTKA 286
           Q    +F E++  +  K   ++  SV   ++ L     G+ +HD L  +   PNDN+T A
Sbjct: 673 QLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAA 732

Query: 287 VFTDLNQKVRSIK 325
           +  D+  K  SI+
Sbjct: 733 II-DMYAKCGSIE 744


>At2g14540.1 68415.m01628 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 407

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 6/148 (4%)
 Frame = +2

Query: 74  IDPQRVLKNGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGES-HDELLK 250
           ID Q  +KN N+     +   +     + + + S  S+   L   A  +  ++    +L 
Sbjct: 29  IDMQEAMKNQNEVSLLLVGKVISAVAKNSNCVFSPASINAVLTVTAANTDNKTLRSFILS 88

Query: 251 AIDFPNDNVTKAVFTDLNQKV----RSIKGVDLKLANKVYIANGHELNDQFAVVSRDVFN 418
            +   +   T A+F +L   V        G  +   N V++      N  +  +  + F 
Sbjct: 89  FLKSSSTEETNAIFHELASVVFKDGSETGGPKIAAVNGVWMEQSLSCNPDWEDLFLNFFK 148

Query: 419 SEVQNLNFG-KNEEAANIINTWVEDHTN 499
           +    ++F  K EE    +NTW   HTN
Sbjct: 149 ASFAKVDFRHKAEEVRLDVNTWASRHTN 176


>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 335 LKLANKVYIANGHELNDQFAVVSRDVFNSEVQNLNFG-KNEEAANIINTWVEDHTN 499
           L +AN V+I     L   F  +  + + +    ++F  K  E  + +NTW E HTN
Sbjct: 27  LSIANGVWIDKFFSLKLSFKDLLENSYKATCSQVDFASKPSEVIDEVNTWAEVHTN 82


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 359 IANGHELNDQFAVVSRDVFNSEVQNLNFGKNEE 457
           ++NGH    +F+   R+ F  +V +  FGK E+
Sbjct: 265 LSNGHSNGFKFSFFGRNTFKDDVSSRTFGKGEK 297


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 424 FRIKHISGHNSKLII*FMTVSNVYFISQFEINSFNRSYFL 305
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 424 FRIKHISGHNSKLII*FMTVSNVYFISQFEINSFNRSYFL 305
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 401 SRDVFNSEVQNLNFGKNEEAANIINTWVEDHTN 499
           +R V + +V  L+  +N+   ++I  W +DH N
Sbjct: 701 ARSVLSDDVDELSNSENDFGDDLILEWAKDHNN 733


>At2g43340.1 68415.m05389 expressed protein
          Length = 189

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 RSSSCDSPVEAIASWANGIMTENADNI 166
           +SS  DSPV  IASW      +N D++
Sbjct: 144 KSSVLDSPVSPIASWKISSPGDNPDDV 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,771
Number of Sequences: 28952
Number of extensions: 197634
Number of successful extensions: 537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)