Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N20
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   4.4  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   4.4  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   4.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   5.8  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   7.6  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    25   7.6  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 296 LLHNIERLA*KLIELVDRCLEHL 228
           LLHNIE  A + +EL  +C + L
Sbjct: 88  LLHNIESNAKRFVELFSQCADAL 110


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 187 FSPSEKY--HRIIGLDSLILKYNFSVTSIPDSTMGMEATLDTTSSRGIL 47
           FSP  K   ++IIG++ L L Y   +  I    MG+  T  T +   +L
Sbjct: 381 FSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLL 429


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 273 KSLDVVEKRVPSI--NLPPQTMYSETRQYV 356
           +S+D+  K+V  I   L P+TMY +T  YV
Sbjct: 305 QSIDLSNKKVCMIAATLRPETMYGQTNCYV 334


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 263 LIELVDRCLEHLNSWQGKLNPRGERFLTK*EIPSDYRVGFLD 138
           ++ L    +    SW GK +PR + F ++ E   D+  G +D
Sbjct: 599 MLNLPPEVIRRKGSWTGKKDPREDMFRSRFE-KFDWTKGLID 639


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 187 FSPSEKYHRIIGLDSLILKYNFSVTSIPD 101
           + P E  H+++GL S  L+ +   T I D
Sbjct: 80  YHPEENVHKVVGLSSAWLELDSEDTLIAD 108


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 141 KESNPIIRWYFSLGEKSLATGIQLALPAVQMF 236
           + S PI     SLG +SLAT    A P VQ++
Sbjct: 6   RRSIPITARLPSLGIRSLATATASAHPPVQLY 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,596
Number of Sequences: 5004
Number of extensions: 42092
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)