Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N20
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 30 1.1
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 29 1.4
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 4.3
03_02_0206 + 6402526-6403933,6405018-6405637 27 5.7
02_05_0881 + 32473208-32473575,32473742-32473826,32473991-324740... 27 5.7
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 27 7.5
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455... 27 10.0
09_06_0262 - 21921647-21922796,21922897-21923423 27 10.0
07_01_0869 + 7214572-7214708,7214777-7214960 27 10.0
02_05_0927 - 32795254-32795465,32795552-32795606 27 10.0
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 25 LWQRRKARGCRGSKLCQGSLPYPS*NQGLTSP 120
+W+ R RG R S C + +P + LTSP
Sbjct: 297 MWESRHRRGSRSSARCAAAADHPGCSDKLTSP 328
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 21 IIMAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLAT 200
++MA +E++ ++ SIP VE + + E+ + + S+ R+Y G+K +
Sbjct: 256 LLMAAPLALGDVEIEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSP 315
Query: 201 G 203
G
Sbjct: 316 G 316
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 194 RHGDSTCPASCSNVRDTD 247
RHG S+ P S SNVRD D
Sbjct: 148 RHGQSSEPQSSSNVRDED 165
>03_02_0206 + 6402526-6403933,6405018-6405637
Length = 675
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 21 IIMAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKS 191
+ + + K +P E R+A+I V+ + V + Y+ K+ ++ Y S+G S
Sbjct: 409 VAVKRLKDVDLPEPEFRERIAAIGAVQHELVVPLRAYYFSKDEKLLVYDYMSMGSLS 465
>02_05_0881 +
32473208-32473575,32473742-32473826,32473991-32474053,
32474199-32474241,32474737-32474796,32475001-32475301,
32475554-32475668,32476168-32476272,32476338-32476517
Length = 439
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 403 SSTAVPSCFTESARRRTYCLVSEYIVCGGKLMEGTLFSTTSSD 275
S AV SCF RRR V+ V GG + F +SD
Sbjct: 209 SREAVASCFVLRRRRRVASSVTTCFVGGGGVAAADPFEAAASD 251
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 351 IVSFPNTSSVVVS*WKALSSPQHRATCIKTYRTGGSVSRTF 229
++S P+TSS + SS +HRA I++ R G + F
Sbjct: 304 VISSPSTSSSAAALHAPWSSVKHRAQIIRSPRRGTPTTTAF 344
>12_01_0561 +
4550119-4550265,4550716-4550791,4551601-4551668,
4551951-4552039,4552136-4552313,4553096-4553229,
4553307-4553520,4553601-4553785,4553930-4554025,
4554105-4554231
Length = 437
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 319 GKLMEGTLFSTTSSDLHKN 263
G+LMEG FS+ +++HKN
Sbjct: 377 GELMEGPKFSSLVTEMHKN 395
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 63 EVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATGI 206
E +S ++P+ E + + Y +I E ++RW ++ G L TG+
Sbjct: 373 EKLSAAVAMPVTE--LCFLAEAYQQIAECRRLLRWTYAYGYYHLGTGL 418
>07_01_0869 + 7214572-7214708,7214777-7214960
Length = 106
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 252 GGSVSRTFEQLAGQVESPWREISHQVRNTI 163
GG+ SR ++ G+ +PW E+ +R I
Sbjct: 20 GGATSRVAQRGRGKDAAPWEEVMQMLRKQI 49
>02_05_0927 - 32795254-32795465,32795552-32795606
Length = 88
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 339 PNTSSVVVS*WKALSSPQHRATCIKTYRTGGS 244
PN SSV+++ KA S+ + A C + Y+ G+
Sbjct: 32 PNCSSVILNPGKACSAAKCNADCSRMYKGTGT 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,107
Number of Sequences: 37544
Number of extensions: 296470
Number of successful extensions: 765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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