Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N20
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39870.1 68415.m04899 expressed protein                             32   0.22 
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf...    28   3.6  
At1g48860.2 68414.m05470 3-phosphoshikimate 1-carboxyvinyltransf...    27   6.3  
At1g48860.1 68414.m05471 3-phosphoshikimate 1-carboxyvinyltransf...    27   6.3  
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden...    27   8.4  

>At2g39870.1 68415.m04899 expressed protein
          Length = 330

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 91  PS*NQGLTSPKNCT-SESRNPTL*SDGISHLVRNLSPRGFNLPCQLFKCSRHRSTSSIS 264
           PS + G TSP + T +E  +     D ++ L R L+P    LP  LFK    R  ++ S
Sbjct: 42  PSFSPGFTSPGDSTETEDESSDDEEDFLAGLTRRLAPSTQRLPSPLFKSEEKRQVAATS 100


>At2g45300.1 68415.m05638 3-phosphoshikimate
           1-carboxyvinyltransferase /
           5-enolpyruvylshikimate-3-phosphate / EPSP synthase
           nearly identical to SP|P05466
          Length = 520

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +3

Query: 60  LEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATG 203
           +E+V ++ S+P VE  + + E+    ++ S+   R++   G+K  + G
Sbjct: 274 IEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFVKGGQKYKSPG 321


>At1g48860.2 68414.m05470 3-phosphoshikimate
           1-carboxyvinyltransferase, putative /
           5-enolpyruvylshikimate-3-phosphate, putative / EPSP
           synthase, putative strong similarity to
           5-enolpyruvylshikimate-3-phosphate (EPSP) synthase
           SP|P05466 from (Arabidopsis thaliana)
          Length = 489

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 9   YAV*IIMAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEK 188
           Y   ++MA         +E+V ++ S+P VE  + + E+     + S    R++   G+K
Sbjct: 201 YLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSAEHSESWDRFFVKGGQK 260

Query: 189 SLATG 203
             + G
Sbjct: 261 YKSPG 265


>At1g48860.1 68414.m05471 3-phosphoshikimate
           1-carboxyvinyltransferase, putative /
           5-enolpyruvylshikimate-3-phosphate, putative / EPSP
           synthase, putative strong similarity to
           5-enolpyruvylshikimate-3-phosphate (EPSP) synthase
           SP|P05466 from (Arabidopsis thaliana)
          Length = 521

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 9   YAV*IIMAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEK 188
           Y   ++MA         +E+V ++ S+P VE  + + E+     + S    R++   G+K
Sbjct: 258 YLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSAEHSESWDRFFVKGGQK 317

Query: 189 SLATG 203
             + G
Sbjct: 318 YKSPG 322


>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
           identical to non-phototropic hypocotyl 3 [Arabidopsis
           thaliana] gi|6224712|gb|AAF05914, PMID:10542152
          Length = 746

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 260 IELVDRCLEHLNSWQGKLNPRGERFLTK*EIPSDYRVGFLDSEVQFFGDVNP*FY 96
           +++V RC E + +W+   NP+G R+    + PS     F  S  ++    +  FY
Sbjct: 182 LQIVRRCSESI-AWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFY 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,412,738
Number of Sequences: 28952
Number of extensions: 231133
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)