Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N19
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 47 1e-05
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 39 0.002
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 32 0.31
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 31 0.54
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 3.8
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 5.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 5.0
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 6.6
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 48.0 bits (109), Expect = 4e-06
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Frame = +1
Query: 76 GTTPVDDKESEHREGFTALVREM------KQALNVKPNMQLVISVLPNVNS-SIYFDVPS 234
G +P DK+ FT L EM K A KP M L +V + ++V
Sbjct: 527 GNSPPQDKQH-----FTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHK 581
Query: 235 IINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKL 414
+ ++D +N+ +D + P P +TA + P ++ A+ YW++ G P K+
Sbjct: 582 LAGILDWINLMTYDLHGPWE-PYTGHHTALVGPPGDK---LTVSYAVKYWMEKGMPCGKI 637
Query: 415 VLGISTTGRTWKLDSDSGNSGVPPIHADEG 504
LG++ G ++L + + P + ++G
Sbjct: 638 ALGMANYGHAFELSDPTKTALGAPANVNKG 667
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +1
Query: 112 REGFTALVREMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQA 270
++ FT L +E+ A + +P + L +V ++V I ++D++N+ A
Sbjct: 265 KQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMA 324
Query: 271 FDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK 450
+D P+ +TA + P + A YWI GAP K+ LG+ T GR +K
Sbjct: 325 YDL-RGMWEPETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAPASKIALGLGTYGRAFK 380
Query: 451 L 453
L
Sbjct: 381 L 381
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Frame = +1
Query: 220 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW----- 384
+D+ I +D +N+ +D + PK +TA P D L AI YW
Sbjct: 584 YDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTA--MGPDG-DKL-TLPFAIWYWMNNRD 638
Query: 385 ------IQNGAPTHKLVLGISTTGRTWKLDSDSGNSGV 480
I+NG P +K+VLG+ T GR + L+S +GN+G+
Sbjct: 639 TWEKPGIRNGMPANKIVLGLGTYGRAFGLES-AGNNGL 675
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 37.1 bits (82), Expect = 0.008
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Frame = +1
Query: 100 ESEHREGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIV 258
E +HR FT L +E+ A KP + L +V + +++ ++ +D +
Sbjct: 150 EDKHR--FTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWI 207
Query: 259 NIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTG 438
N+ ++D + + + A + + DPL A++ WI G P++K+ LGI G
Sbjct: 208 NLMSYDLHGDWEDT--TGHHAAMDSSTG-DPL-TVTHAVDLWIAGGMPSNKIALGIPLYG 263
Query: 439 RTWKLDSDSGNSGVPPIHADEG 504
R++ L + + P +G
Sbjct: 264 RSFTLKTANKTLDAPATKGGQG 285
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 88 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 237
+DDK++E +E FT V + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 88 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 237
+DDKE E E FT + + +NVKP + + N ++SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 64 KKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 243
+KT DD++ E E FT + M + KP+ ++++ N ++++ F V S++
Sbjct: 5260 RKTIQIPITDDQKVEGDESFTVAITSMNPNVMTKPD-TATVTIIDN-DATVGF-VESLVV 5316
Query: 244 LVDI 255
L D+
Sbjct: 5317 LEDV 5320
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 384 DSKWCAYPQTCPWYQHHWTYVEARFRQWKF 473
D + C+YP T PW WT + + R W+F
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS-CRSWEF 108
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 31.1 bits (67), Expect = 0.54
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 67 KTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 237
K F +DD E+ E F + + V P++ V V+ + ++ I FDVPSI
Sbjct: 950 KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 327 LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR-FRQWKFRSSTD 488
LR + PRS ++ + K+ ++P P +HHWT E R ++ F + TD
Sbjct: 26 LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEERALVEFIFIAKTD 81
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 85 PVDDKESEHREGFTALVREM 144
P DDK +E R FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 61 IKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 219
+KK F + V EH+ GF + A + K +++LV S P + +SIY
Sbjct: 306 LKKPFKQSEVVKNTKEHQNGFPFVAATTSGAAHWKTSVELVNS--PALGTSIY 356
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 316 TAPIYAPQNRDPLQNADAAI-NYWIQNGAPTHKLVLGISTTGRTWKLDSDSGNSGVPPIH 492
T P YA Q R + N W G + G + +G++W + N G+ PI
Sbjct: 1055 TQPNYADQRRVYEDVGKTVLQNAW--EGYNSTLFAYGQTGSGKSWSIVGYGANKGIVPIF 1112
Query: 493 ADE 501
DE
Sbjct: 1113 CDE 1115
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 318 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 145
SV F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 144 HLTYKSGEAF 115
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 357 KRRRCYKLLDSKWCAYPQTCP 419
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,393
Number of Sequences: 59808
Number of extensions: 337383
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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