Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N17
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 100 2e-22
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 28 1.00
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.3
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 27 1.7
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 3.0
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 26 3.0
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 4.0
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 4.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 4.0
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 5.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 5.3
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.3
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 100 bits (239), Expect = 2e-22
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Frame = +1
Query: 40 RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 210
RA+A L G++ + G +TF ++ + +V V +VG GFH+H+ GD + GC S G
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 211 SHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHE 390
HFNPE K HG + RHVGDLGN E D + K D +++ GA+ I+GR +V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122
Query: 391 RADDFGRLTTQ 423
DD G+ T++
Sbjct: 123 GEDDLGKGTSE 133
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S KTGNAG R ACGVIGI
Sbjct: 134 ESLKTGNAGARNACGVIGI 152
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 27.9 bits (59), Expect = 1.00
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +1
Query: 175 KGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGA 354
KGD +GG GS F EN + H + + + NA D N S + G
Sbjct: 92 KGDGTGGKSIYGSRFPDENFKLSH---QRPGLLSMANAGPDSNGSQFFITTVKTPWLDGH 148
Query: 355 HGILGRAVVLHERADDFGRLTTQIREKP 438
H + G + ++ + T R+KP
Sbjct: 149 HVVFGEVLSGYDIVKKISKAETDNRDKP 176
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 226 ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 345
ENK HG D+ D + E K Y+SKI+ ID + I
Sbjct: 85 ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 253 DENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRLTTQIRE 432
D + V L A +D N + +DM + +A A GIL A+ L + G Q+
Sbjct: 453 DSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGIL-EALKLKQAVVSSGSEGAQLLL 511
Query: 433 KPATLVDASP 462
+ T++ A+P
Sbjct: 512 RVDTILKAAP 521
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 64 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 240
EN+ + TR+ DGK V + G + F H+ ++ G S+F+ E + H
Sbjct: 30 ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88
Query: 241 GHPSDENRHV 270
+ SDE+ +V
Sbjct: 89 RNDSDESENV 98
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 214 HFNPENKEHGHPSDENRH 267
H N + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 424 IREKPATLVDASPAVSSEYCKTSLYLFIFVVL 519
+ EK L D S CKTS+Y+ +F L
Sbjct: 119 VLEKLLLLQDYSSWTHGNSCKTSIYILLFFAL 150
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 146 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 57
GGS P S + +PS S VN+ PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 265 HVGDLGNAEFDKNYSSKIDMIDPHL 339
HV + GN FD + S + ++D L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 205 TGSHFNPENKEHGHPSDENRHVGDLGN 285
T + +PE+ G PSD N LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 478 IPMTPQATRPPALPVFLESG 419
+P P +PPA+PV E+G
Sbjct: 673 VPEVPSVPQPPAVPVVPEAG 692
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 132 DRSFYVDLAVRQPSERNIASDVLP 61
D S Y+ ++ PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 481 SIPMTPQATRPPALPVFLESGWSGGR 404
S+P TP + P + P++ +G +GG+
Sbjct: 333 SLPATPNGSVPQSNPLYDTTGLNGGQ 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,475
Number of Sequences: 5004
Number of extensions: 46356
Number of successful extensions: 142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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