Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N17
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 116 1e-26
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 116 1e-26
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 116 1e-26
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 116 1e-26
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 116 1e-26
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 116 1e-26
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 116 1e-26
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 106 9e-24
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 28 3.6
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 28 3.6
Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical pr... 27 8.4
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 8.4
AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical ... 27 8.4
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 216
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 217 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 396
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++GR++V+H
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQ 123
Query: 397 DDFG 408
DD G
Sbjct: 124 DDLG 127
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S+KTGNAG R ACGVI +
Sbjct: 136 ESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 216
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 217 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 396
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++GR++V+H
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQ 123
Query: 397 DDFG 408
DD G
Sbjct: 124 DDLG 127
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S+KTGNAG R ACGVI +
Sbjct: 136 ESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 216
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 217 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 396
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++GR++V+H
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQ 123
Query: 397 DDFG 408
DD G
Sbjct: 124 DDLG 127
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S+KTGNAG R ACGVI +
Sbjct: 136 ESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 116 bits (279), Expect = 1e-26
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 216
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 26 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 85
Query: 217 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 396
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++GR++V+H
Sbjct: 86 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQ 145
Query: 397 DDFG 408
DD G
Sbjct: 146 DDLG 149
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S+KTGNAG R ACGVI +
Sbjct: 158 ESKKTGNAGARAACGVIAL 176
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 116 bits (278), Expect = 1e-26
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 219
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 220 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERAD 399
NP HG P D NRH+GDLGN E + + I + D +++G + I+GR+VV+HE+ D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTD 148
Query: 400 DFGRLTT 420
D GR T+
Sbjct: 149 DLGRGTS 155
Score = 31.1 bits (67), Expect = 0.52
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 426 SRKTGNAGGRVACGVIG 476
S+ TGNAG R+ACG IG
Sbjct: 158 SKTTGNAGSRLACGTIG 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 116 bits (278), Expect = 1e-26
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 219
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 220 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERAD 399
NP HG P D NRH+GDLGN E + + I + D +++G + I+GR+VV+HE+ D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTD 148
Query: 400 DFGRLTT 420
D GR T+
Sbjct: 149 DLGRGTS 155
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 426 SRKTGNAGGRVACGVIGIL 482
S+ TGNAG R+ACG IGI+
Sbjct: 158 SKTTGNAGSRLACGTIGIV 176
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 116 bits (278), Expect = 1e-26
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 219
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 220 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERAD 399
NP HG P D NRH+GDLGN E + + I + D +++G + I+GR+VV+HE+ D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTD 148
Query: 400 DFGRLTT 420
D GR T+
Sbjct: 149 DLGRGTS 155
Score = 31.1 bits (67), Expect = 0.52
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 426 SRKTGNAGGRVACGVIG 476
S+ TGNAG R+ACG IG
Sbjct: 158 SKTTGNAGSRLACGTIG 174
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 106 bits (255), Expect = 9e-24
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Frame = +1
Query: 40 RAIAHLVGENIRGNITFTRLPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 216
RA+A L G + G + T+ +G+ EG I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 217 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 396
FNP HG RHVGDLGN E + +KI D +++ GA+ ++GR++V+H
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDR 143
Query: 397 DDFGR 411
DD G+
Sbjct: 144 DDLGQ 148
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 423 DSRKTGNAGGRVACGVIGI 479
+S KTGNAG R ACGVI +
Sbjct: 156 ESLKTGNAGARAACGVIAL 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 7 VSGHHERSQPTRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEK 177
++ H T A+A L+ G +I G TF++L + + G + LP G + +H+
Sbjct: 872 ITPHDAFVDDTIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQF 930
Query: 178 GDISGGCGSTGSHFN 222
GD S GC G+ F+
Sbjct: 931 GDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 7 VSGHHERSQPTRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEK 177
++ H T A+A L+ G +I G TF++L + + G + LP G + +H+
Sbjct: 663 ITPHDAFVDDTIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQF 721
Query: 178 GDISGGCGSTGSHFN 222
GD S GC G+ F+
Sbjct: 722 GDSSEGCSRVGAPFS 736
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 331 GRSYQSCWSSSCQIPRYQDP 272
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 331 GRSYQSCWSSSCQIPRYQDP 272
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
>Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical
protein F16H6.3 protein.
Length = 257
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 404 KSSARSCRTTALPRIPCAPVM-ARC 333
K+SA +CR PR+ CA ++ A+C
Sbjct: 112 KTSAYNCRNADFPRLNCATILPAQC 136
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 496 REMFYSIPMTPQATRPPALPVFLESGWSGGRNHQPARVEPQP 371
++ + + TP RP F+E +G N PA V+PQP
Sbjct: 316 QQQVHQVFTTPIPHRPFVPETFVEQVEAGQANLVPAPVQPQP 357
>AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical
protein T28F2.2 protein.
Length = 175
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 LAITGAHGILGRAVVLHERADDFGRLTTQI-REKPATLVDASPAVSSEYCKTSLY 498
L + HGI R V + +++ ++ + + RE AT++DASP+ + T +Y
Sbjct: 87 LGLPPEHGIQLRKVYENYKSELREKVCSSVYREPHATIIDASPSSITFQADTQMY 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,931
Number of Sequences: 27780
Number of extensions: 281723
Number of successful extensions: 789
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -