Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N16
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.0  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   4.0  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   5.3  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 135 LLTAFSIGITW*RHFKHYQKTVRGELRV*SF 43
           L   F++G+++   F H +K V GE+R+ +F
Sbjct: 123 LFLKFALGVSYVLCFLHEKKIVHGEIRLDTF 153


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 368 DVYDSHGVQLIIFH 327
           ++YDSHG Q++ FH
Sbjct: 289 EIYDSHGSQILSFH 302


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 225 CLYDYVICTISLYFGVRLIYIES 293
           CL D+   TISL+FG+ +  ++S
Sbjct: 502 CLLDHSTSTISLFFGLLIFTLKS 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,703
Number of Sequences: 5004
Number of extensions: 55140
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)