Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N16
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356     31   1.0  

>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
          Length = 292

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = +3

Query: 435 QEAGELCGYFFWSRTAVWCGNE*TSRVVTSRERPGTAED----------GGRPLGV 572
           +E  E CGYFF +R+  W     T+R   +     T +D          GGRP+GV
Sbjct: 82  EEEEERCGYFFCTRSFRWPSGTRTNRATATGYWKSTGKDKAVLHGGGGGGGRPVGV 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,081
Number of Sequences: 37544
Number of extensions: 304976
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)