Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N16
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 566 ERPPAILSR--SRPLP*RHNTTRSFISTPNRCTTPKKVSTELT 444
           E PPA+  R  S P P      +S   +P+ CTTP++ STEL+
Sbjct: 792 EPPPALPPRKHSDPPPLPPRRKKSHEDSPSPCTTPRRKSTELS 834


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 540 FPASPVTSQHDSFIHFHTKPLYDSKK 463
           FP +P T+  +   H +TKP + S+K
Sbjct: 305 FPPNPATNDEEGMQHRNTKPAHSSRK 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,739
Number of Sequences: 59808
Number of extensions: 378087
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)