Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N16
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    28   4.9  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    28   6.5  

>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 342 LNTMRIVYVTEMFYLI*QL*TVYNFMLVKYYQEAGELCGYFFWSRTAVWC 491
           LN ++++ +  +F ++ Q   VY    + YY    E     FWSRT  +C
Sbjct: 144 LNNLQVISIL-VFSIVSQTYYVY-LCFMDYYPFCEEYIAIMFWSRTLFFC 191


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
 Frame = +1

Query: 106 RYSNTKGSK*IRGFAIKKK--C*LRIIEYKSCLCDCLYVWRFAYMIM*YVP--LVYTL-- 267
           + S TK  K +R   +K+   C  +  +Y    C C+ VWR  ++++ +    L++TL  
Sbjct: 35  KVSVTKKKKKVRK-CVKRGFICCFKFCKYTFLCCRCVIVWRCLWLLIIFFVGCLIFTLFY 93

Query: 268 V*G*FILKVLL*RKNIYYTRWKIIN*TP*ESYTSQRCSI*FDSCKRYIILC*LNIIRKPV 447
               +IL++ L  K    T+  +    P  S    R +I F +C          I +KPV
Sbjct: 94  YDDRYILQIQLFSKRSVSTKTIL---KPYSSINKLRVAINFSNCFNPAQSSRFFIYKKPV 150

Query: 448 S 450
           S
Sbjct: 151 S 151


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 195 TRFILYYS*LTFFFYS---EPTYLLTAFSIGITW 103
           TR ++Y + L F F++   EPTY+LT +  G  +
Sbjct: 83  TRPLIYINPLCFLFWNWFPEPTYILTPYLFGFNY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,077
Number of Sequences: 27780
Number of extensions: 303366
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)