Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N16
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...    30   1.5  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   3.4  
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    28   4.5  
At2g38840.1 68415.m04772 guanylate-binding family protein simila...    27   7.9  

>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 181 LLFVTNIFFL*RTHVFTYCL*YWNNVVTTF*TLSENSPRRA 59
           L ++ NI ++  T VF  CL YWN++V        NS   A
Sbjct: 342 LEYLINISYVDDTEVFKVCLDYWNSLVLELFDAHHNSDNPA 382


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 563 RPPAILSRSRPLP*RHNTTRSFISTPNRCTTPKKV 459
           +PPA  S   PLP   N+T+SF S P   TTP  V
Sbjct: 564 QPPAASSSLSPLPPVFNSTQSFQSPP-VSTTPSAV 597


>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 27/106 (25%), Positives = 53/106 (50%)
 Frame = -2

Query: 418 IKLYTVYNCQIK*NISVTYTILMVFS**SSTEYSIYFFFIRGLSI*INLTPKYKLMVHIT 239
           +K+Y+++  Q++  + +   I   +S  SS E +    FI+ L++    T  +KL + I 
Sbjct: 275 VKMYSIFMNQLQAILPLNLNIPEAYSTGSSEEQA----FIQNLAL--FFTSFFKLHIKIL 328

Query: 238 *SYRQTATRTDSHTNKIYTLLFVTNIFFL*RTHVFTYCL*YWNNVV 101
            S  +  +        +  L ++ +I ++  T VF  CL YWN++V
Sbjct: 329 ESAPENISLL------LAGLGYLISISYVDDTEVFKVCLDYWNSLV 368


>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +2

Query: 290 KSSYKEKIYTILGGR--LLTEHHENRIRHRDVLFDLTVVNGI*FYVS*ILSGSR*ALWIL 463
           K +Y++++  ++G    L  + + NR+ +  V F L +V    F +  IL     A WIL
Sbjct: 533 KQNYEQRLTKMMGKSRSLFIKEYNNRLFNWLVGFSLVMVVVGRFIIKFILLEM--AAWIL 590

Query: 464 F--LESYSGLVW 493
           F  LE+Y+ + W
Sbjct: 591 FIFLETYTRMFW 602


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,596
Number of Sequences: 28952
Number of extensions: 266675
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)