Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N14
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...   126   2e-30
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.6  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   4.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score =  126 bits (304), Expect = 2e-30
 Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 1/164 (0%)
 Frame = +2

Query: 56  EGLVNNVKWQMSSDRKAGPLKLLQGLIWKQGYDKGEIKGHIYDDVSPALEQWRSTE-GQK 232
           E L+N  K      ++    K++QG IWK+GY+  E+  H++ DV PA++  RS + G +
Sbjct: 54  EALINLRKLHAEGSKERS-FKMVQGRIWKKGYESNELTSHLFPDVVPAIQ--RSLQLGMR 110

Query: 233 IYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGPKQESTSYTMISEKIGCKTEDIL 412
           +YIYSSGSV AQKL F  S AG+LL    G++DT +G K E  SY  I         + L
Sbjct: 111 VYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLKTECGSYVKIVG--NSNPREWL 168

Query: 413 FLTDIVKEAEAARSSGMHAALVSREGNGPLSTEATASFPVLHSF 544
           FL+D + E +AAR  G+H  LV R GN P+    T+ FPV +SF
Sbjct: 169 FLSDNINELKAARKVGLHTGLVVRPGNDPVVD--TSGFPVYNSF 210


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -3

Query: 487 LAAD*RRVHARGTSRFSLFNNISQEQN---VLSFTTNFL*DHCITSAFLLRTDCSVEVSI 317
           L  D  R H +G +   + +++SQ  N   VL      L   C     +L  D    VSI
Sbjct: 608 LVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLIQRCARKELVLFEDFENNVSI 667

Query: 316 DER 308
           DE+
Sbjct: 668 DEK 670


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 250 RVCSSPEASLRSVKCWRSPTAHRWTLRHCSRSE 348
           R  + PEA  RS++  R     +W L HCS +E
Sbjct: 171 RNANLPEAFSRSIEFKRR--LEKWLLEHCSETE 201


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 123 NSLSGPALRSDDICHFTLLTSPSIWSSLDASSP 25
           NSLS P+ R+    H   L++PS  SSL+ SSP
Sbjct: 180 NSLSPPSSRALKPIHS--LSNPSTASSLEPSSP 210


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 558  AVSCTKLCSTGNEAVASVDSGPLPSRLTSAACMPEERAASASLTISVRNKMSSVLQP 388
            A   T   +T  +A     S P PS +TSAA  P   +  ++   +  +K S+V  P
Sbjct: 1041 AAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPP 1097


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 503 STEATASFPVLHSFVQLTATN 565
           S+  T +FP L SF + TATN
Sbjct: 28  SSSTTGAFPQLTSFTKPTATN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,772
Number of Sequences: 5004
Number of extensions: 49882
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)