Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N14
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4) 93 2e-19
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13) 30 1.2
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) 29 2.9
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_33444| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.7
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_15575| Best HMM Match : APH (HMM E-Value=2.5e-26) 27 8.7
>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
Length = 157
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/87 (50%), Positives = 59/87 (67%)
Frame = +2
Query: 29 EDASKEDQIEGLVNNVKWQMSSDRKAGPLKLLQGLIWKQGYDKGEIKGHIYDDVSPALEQ 208
E A +E L+ + M DRK+ LK LQG+IW++GY G+ GH+Y DV P+LE+
Sbjct: 14 EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73
Query: 209 WRSTEGQKIYIYSSGSVQAQKLLFGQS 289
W+S +G +Y+YSSGSV AQKLLFG S
Sbjct: 74 WKS-QGIDLYVYSSGSVAAQKLLFGYS 99
>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
Length = 1052
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 203 EQWRSTEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGP--KQESTSYTMI 376
+++ + +Y+ +G+V K + S+G++L +DG G + YTMI
Sbjct: 648 QEYTTLNDTAVYLIDAGAVIQAKDYYHNGSSGEILVCMDGRTRNCTGTYVRLSENEYTMI 707
Query: 377 SEK 385
S +
Sbjct: 708 SNR 710
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 552 SCTKLCSTGNEAVASVDSGPLPSRLTSAACMPEERAASASLTISVRN 412
SC K+C G D P+ T +AC P S+T+S+ N
Sbjct: 1723 SCPKVCGPGCPVQCCSDLNICPANCTGSACKPGCITIEDSVTVSLGN 1769
>SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 83 QMSSDRKAGPLKLLQGLIWKQGYDKGEIKGHIYDDVSPALEQWRSTEGQKIYIYSSGSVQ 262
+M+S R + +L GL++ G G ++ D P +QWR + + G+
Sbjct: 323 EMNSRRCRAGVSVLDGLVYAVGGFNGSLRVRTVDCYDPIKDQWRPAASMEARRSTLGAAV 382
Query: 263 AQKLLF 280
LL+
Sbjct: 383 LNGLLY 388
>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
Length = 171
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 422 DIVKEAEAARSSGMHAALVSREGNGPLSTEATASFP 529
D K+ ++A+ +G+H LV N PL E FP
Sbjct: 130 DSAKKGKSAQITGVHPQLVDMASNKPLIKETMEHFP 165
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 8 GLVAIPGEDASKEDQIEGLVNNVKWQMSSDRKAGPLKLLQGLIW-KQG 148
G +A PGED +K+D I+ L ++ + S R+ L+GL++ KQG
Sbjct: 201 GHLAPPGEDKTKQDLIQNL-GRLRQRRRSIREIQNRDELEGLMYVKQG 247
>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 516 VASVDSGPLPSRLTSAACMPEERAASAS 433
+AS SGPL L AACM +E AS
Sbjct: 147 IASCFSGPLCELLPEAACMDQEMLIQAS 174
>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1643
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 245 SSGSVQAQK--LLFGQSSAGDLLPLIDGHFDTAVGPKQESTSYTMISEKIGCKTEDILFL 418
S+G +Q QK LL + G L D F+T++ PK + T+ TMI+ L L
Sbjct: 1124 SNGQLQTQKPTLLRSLFTLGLLCKHFD--FETSMEPKNQETAMTMITNSSSVPRYAELLL 1181
Query: 419 TDIVK 433
D K
Sbjct: 1182 KDDAK 1186
>SB_33444| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 85 LPFHIVDQSFNLVFLRCVLSWNSN 14
LP HI DQ+F+ C ++W N
Sbjct: 156 LPVHIADQTFSPHLGECEINWGKN 179
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 225 PSVDRHCSRAGETSSYMWPLISPLSYPCFQISPCNS 118
PS+D + ET+ Y W PCF+ P N+
Sbjct: 2123 PSIDP--DKTSETAWYRWECFDSSENPCFRPDPVNA 2156
>SB_15575| Best HMM Match : APH (HMM E-Value=2.5e-26)
Length = 477
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +2
Query: 356 STSYTMISEKIGCKTEDILFLTDIVKEAEAARSSGMHAALVSREGNGPLSTEATASFPV 532
S Y I +++G ++D++++ K EAA+++G V + E FP+
Sbjct: 151 SDFYEHIKQQLGISSDDVIYVDCDDKNVEAAKNAGFVTLKVDCDVPSFKEIETALQFPL 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,056,077
Number of Sequences: 59808
Number of extensions: 405459
Number of successful extensions: 1037
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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