Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N14
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical pr... 159 1e-39
AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 30 1.4
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 29 1.9
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 29 1.9
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 29 3.3
U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein. 28 4.4
U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3... 28 4.4
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 28 4.4
>Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical
protein F58H1.3a protein.
Length = 492
Score = 159 bits (387), Expect = 1e-39
Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%)
Frame = +2
Query: 5 EGLVAIPGEDASKEDQIEGLVNNVKWQMSSDRKAGPLKLLQGLIWKQGYDKGEIKGHIYD 184
E VA+ +++ IE + NV+ + D+K P+K LQGLIW++ Y +G++KGH+Y
Sbjct: 66 ENDVAVVRIREPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIWEEAYQRGDVKGHVYP 125
Query: 185 DVSPALEQWRSTEGQKI--YIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGPKQES 358
DV P L + E +KI YIYSSGSV AQKLLF S GD+ ++ G+FDT +G K ES
Sbjct: 126 DVLPVL---KIVENRKIPIYIYSSGSVHAQKLLFANSIEGDMTKILYGYFDTNIGLKGES 182
Query: 359 TSYTMISEKIGCKTEDILFLTDIVKEAEAARSSGMHAALVSREGNGPLSTEATASFPVLH 538
SYT ISE+I +ILFLTD+ EA AA+ +G+ LV R GN L+ EA ++ +
Sbjct: 183 NSYTKISERIKIPPSEILFLTDVEAEAAAAKKAGLQTKLVVRPGNAGLTQEAINAYGTIE 242
Query: 539 SFVQL 553
+F+ +
Sbjct: 243 TFLNI 247
>AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical
protein Y51A2D.7a protein.
Length = 989
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 214 IHGGSEDIHLLFRVCSSPEASLRSVKCWRSPTAHRWTLRHCSRSEARKH 360
+ G + + L +R AS + WR+P AHR +R +E R+H
Sbjct: 517 VAGNPDGLPLGYRTLLPTNASQDVGRVWRAPRAHRLLVRPGIPAETRQH 565
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 522 EAVASVDSGPLPSRLTSAACMPEERAASASLTISVRNK 409
E V + GP P R A+ +P+ RAA+A+ S+ N+
Sbjct: 295 EPVETPRIGPSPRRFVPASAIPDLRAANAAARSSMHNR 332
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 522 EAVASVDSGPLPSRLTSAACMPEERAASASLTISVRNK 409
E V + GP P R A+ +P+ RAA+A+ S+ N+
Sbjct: 295 EPVETPRIGPSPRRFVPASAIPDLRAANAAARSSMHNR 332
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 152 DKGEIKGHIYDDVSPALEQWRSTEGQKIYIY 244
+K E+ +Y+D+S + W +T G+ Y+Y
Sbjct: 127 NKAEMNSTVYNDMSLIVAVWANTPGEGKYVY 157
>U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein.
Length = 393
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 210 HCSRAGETSSYMWPLISPLSYPCFQISPCNSLSGPALRSDDICHFTLLTSPS-IWSSLDA 34
H R+ +T SY + S Y C LS P + + ++SP+ IW S +
Sbjct: 102 HELRSIDTCSYPYESSSKTMYICINPYHYQRLSRPQGLNSSMPSPQPISSPNTIWQSSGS 161
Query: 33 SSPGIATSPS 4
S+ A+SPS
Sbjct: 162 STASCASSPS 171
>U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3
protein.
Length = 393
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 210 HCSRAGETSSYMWPLISPLSYPCFQISPCNSLSGPALRSDDICHFTLLTSPS-IWSSLDA 34
H R+ +T SY + S Y C LS P + + ++SP+ IW S +
Sbjct: 102 HELRSIDTCSYPYESSSKTMYICINPYHYQRLSRPQGLNSSMPSPQPISSPNTIWQSSGS 161
Query: 33 SSPGIATSPS 4
S+ A+SPS
Sbjct: 162 STASCASSPS 171
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 242 YSSGSVQAQKLLFGQSSAGDLLPLIDG 322
YS+G V +K + GQ S+ D PL+ G
Sbjct: 78 YSTGQVTTRKSVLGQVSSADQFPLLYG 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,526
Number of Sequences: 27780
Number of extensions: 287410
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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