Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N13
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.75
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 28 1.00
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 3.0
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 7.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.0
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 7.0
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 9.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 9.3
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.75
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 131 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 253
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.00
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +2
Query: 116 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 262
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 284 DNRFCTISRILQQLSYWCSYRCW 216
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 149 QDVDQVNVDDEYYKIGKDYDVEANIDN 229
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 636 YNILLFLFYNSIINSLCIVKN 574
Y ++FLF N +++ +C VKN
Sbjct: 35 YISIIFLFLNYVVDIVCYVKN 55
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 116 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 265
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 621 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 517
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 511 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEE 624
P F ++D L +YR+K +D HD K+ ++ EE+
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED 152
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 636 YNILLFLFYNSIINSLCIVKNTVLH 562
Y ++ FYN+I + L VKNT +H
Sbjct: 398 YTVVKVDFYNNIKSYLSEVKNTEIH 422
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 212 EANIDNYTNKKAVEEFLKLYRIGYLPK 292
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 419 NEGQFL-YAYYIAVIQRNDTHG 481
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,661
Number of Sequences: 5004
Number of extensions: 50930
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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