Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N13
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    31   0.59 
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   3.1  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   7.2  

>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 387 TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKLST 515
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K+ST
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELKVST 108


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 362 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAVI-------QRNDTHGFVLPAPYEVIHNS 520
           Y KD   FY  +   +  + EG+FL ++Y+ +        +  D    +     E+ H  
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQIAPSTVNIRKLEDEEDKLTSMLQELAHKR 756

Query: 521 SLIWTLYLRFIALKCKTVF 577
           S    +Y R IAL+   ++
Sbjct: 757 SPYGDVYHRCIALEFSVMY 775


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 409 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 263
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,806,048
Number of Sequences: 37544
Number of extensions: 306200
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)