Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N11
(495 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ... 112 5e-24
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5... 93 4e-18
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12... 88 9e-17
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n... 88 1e-16
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j... 69 4e-11
UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RA... 66 4e-10
UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a... 62 9e-09
UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole gen... 59 5e-08
UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, wh... 56 6e-07
UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep: F17... 55 1e-06
UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;... 53 3e-06
UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein RA... 53 4e-06
UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11; Liliopsida|... 49 5e-05
UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2; ... 49 5e-05
UniRef50_Q4TIG1 Cluster: Chromosome undetermined SCAF2176, whole... 43 0.003
UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome a... 40 0.031
UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.093
UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.1
UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA... 33 2.7
UniRef50_A2YNA9 Cluster: Putative uncharacterized protein; n=1; ... 33 3.5
UniRef50_Q2YHP1 Cluster: Monodehydroascorbate reductase; n=1; Pl... 33 4.6
UniRef50_UPI0000519EC5 Cluster: PREDICTED: similar to Tyrosine-p... 32 6.1
UniRef50_A5ZEM4 Cluster: Putative uncharacterized protein; n=1; ... 32 6.1
UniRef50_Q97RX5 Cluster: Cytochrome c-type biogenesis protein Cc... 32 8.1
UniRef50_A3XNI3 Cluster: Putative uncharacterized protein; n=2; ... 32 8.1
UniRef50_Q1E7C4 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
Drosophila melanogaster (Fruit fly)
Length = 64
Score = 112 bits (269), Expect = 5e-24
Identities = 52/64 (81%), Positives = 57/64 (89%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
MAP QRMR+ANE ASK +T+RGNVPKS+K KE QYPV PWLLALFIFVVCGSAIFQI+QS
Sbjct: 1 MAPPQRMRVANEKASKYVTMRGNVPKSSKTKEGQYPVGPWLLALFIFVVCGSAIFQIVQS 60
Query: 341 IRLA 352
IR A
Sbjct: 61 IRAA 64
>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 66
Score = 92.7 bits (220), Expect = 4e-18
Identities = 46/64 (71%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTK-EKEDQYPVAPWLLALFIFVVCGSAIFQIIQ 337
M KQR+R+ANE SKNITLRGNV KST+ +E++ V PWLLALF+FVVCGSAIFQIIQ
Sbjct: 1 MVAKQRIRMANEKHSKNITLRGNVAKSTRGTQEEKAVVGPWLLALFVFVVCGSAIFQIIQ 60
Query: 338 SIRL 349
SIR+
Sbjct: 61 SIRM 64
>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
n=2; Bilateria|Rep: Putative uncharacterized protein
T09A12.5 - Caenorhabditis elegans
Length = 63
Score = 88.2 bits (209), Expect = 9e-17
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
MAPKQRM +AN SKN+T RGNVPK K E ++P + WL+ LFIFVVCGSAIF++I+
Sbjct: 1 MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRY 60
Query: 341 IRL 349
I++
Sbjct: 61 IKV 63
>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
4 - Homo sapiens (Human)
Length = 66
Score = 87.8 bits (208), Expect = 1e-16
Identities = 44/64 (68%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEK-EDQYPVAPWLLALFIFVVCGSAIFQIIQ 337
M KQR+R+ANE SKNIT RGNV K+++ E++ V PWLLALFIFVVCGSAIFQIIQ
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQ 60
Query: 338 SIRL 349
SIR+
Sbjct: 61 SIRM 64
>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02042 protein - Schistosoma
japonicum (Blood fluke)
Length = 79
Score = 69.3 bits (162), Expect = 4e-11
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +2
Query: 158 KMAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQ 337
+M+ QRM++ N A N+ RGNVPKS K + Q + +L L +FVVCGSA+F+IIQ
Sbjct: 14 RMSASQRMKVQNGKAHGNVVNRGNVPKSLKSSDSQSNMNACILGLIVFVVCGSAVFEIIQ 73
Query: 338 SIRLA 352
IR+A
Sbjct: 74 HIRMA 78
>UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RAMP4
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Ribosome associated membrane protein RAMP4
containing protein - Tetrahymena thermophila SB210
Length = 107
Score = 66.1 bits (154), Expect = 4e-10
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +2
Query: 170 KQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSI 343
KQ+M++ + + +KN+T RG VP S K KE++ V PW+L +F+FVV GSAIFQI+ +
Sbjct: 48 KQQMKLKSNLHNKNVTNRGKVPSSLKSKEEK-SVGPWVLGIFLFVVVGSAIFQILNVV 104
>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
attached membrane protein 4; n=1; Pan troglodytes|Rep:
PREDICTED: similar to ribosome attached membrane protein
4 - Pan troglodytes
Length = 231
Score = 61.7 bits (143), Expect = 9e-09
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +2
Query: 152 PRKMAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQI 331
PR+ +P + ++ P+ E++ V PWLLALFIFVVCGSAIFQI
Sbjct: 164 PRRWSPSRGSVWPTRSTARTSPSAATSPRPRNAPEEKASVGPWLLALFIFVVCGSAIFQI 223
Query: 332 IQSIRL 349
IQSIR+
Sbjct: 224 IQSIRM 229
>UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr1 scaffold_136, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 105
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = +2
Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
KNIT RG+VP++T +K YPV P LL F+FVV GS++FQII++
Sbjct: 54 KNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRT 98
>UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 75
Score = 55.6 bits (128), Expect = 6e-07
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +2
Query: 173 QRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQII 334
Q M++ ++ N+ +G VPKS +KE+ PV P LL +F+FVV GSA+FQI+
Sbjct: 13 QTMKLRSQNYQGNVNKQGKVPKSLIKKEENLPVGPILLGVFLFVVVGSALFQIL 66
>UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep:
F17L21.12 - Arabidopsis thaliana (Mouse-ear cress)
Length = 77
Score = 54.8 bits (126), Expect = 1e-06
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +2
Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
KNI RG VP++T +K YPV P LL F+FVV GS++FQII++
Sbjct: 26 KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 70
>UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 65
Score = 54.0 bits (124), Expect = 2e-06
Identities = 29/60 (48%), Positives = 39/60 (65%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
MA + ++ E+ KNI RG+V S+ +K+ YPV P+ L LFIFVV GSAI Q+I S
Sbjct: 1 MAQSRFTKLKGELYEKNIDKRGSV--SSSKKKSGYPVGPFALGLFIFVVIGSAIIQMIVS 58
>UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;
n=3; Plasmodium|Rep: Arabidopsis thaliana
F17L21.12-related - Plasmodium yoelii yoelii
Length = 67
Score = 53.2 bits (122), Expect = 3e-06
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQII 334
MA +++ E NIT RGNVP S +K +Y V P LL +FIF+V GS + QI+
Sbjct: 1 MASNRKINKKIETFDNNITNRGNVPTSIAKKGKKYTVGPILLGIFIFIVIGSVVIQIL 58
>UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein
RAMP4, putative; n=3; Plasmodium|Rep: Ribosome
associated membrane protein RAMP4, putative - Plasmodium
vivax
Length = 102
Score = 52.8 bits (121), Expect = 4e-06
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +2
Query: 158 KMAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQ 337
KMA +++ NIT RGNVP S +K ++PV P LL +F+FVV GS Q++
Sbjct: 34 KMASNRKISQKINAFDNNITHRGNVPASLVKKGKKHPVGPILLVIFVFVVIGSVFIQMLS 93
Query: 338 SIR 346
I+
Sbjct: 94 MIQ 96
>UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11;
Liliopsida|Rep: Os11g0637400 protein - Oryza sativa
subsp. japonica (Rice)
Length = 573
Score = 49.2 bits (112), Expect = 5e-05
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGS 316
KNIT RG+VP++T +K + YPV P +L FIFVV GS
Sbjct: 27 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 63
>UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 460
Score = 49.2 bits (112), Expect = 5e-05
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGS 316
KNIT RG+VP++T +K + YPV P +L FIFVV GS
Sbjct: 17 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 53
>UniRef50_Q4TIG1 Cluster: Chromosome undetermined SCAF2176, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF2176,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 93
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 169 KTEDAHCK*DRQQKYHLARKCP*IHKGKGRSIPGRTLATSSLYFCRLRLSYLPDNP 336
+TED H + QQK+H RK G IP LA L CR+R+S+L D+P
Sbjct: 22 RTEDPHGQRKTQQKHHAERKRSQDAAAAGGEIPRGPLAPRPLRICRVRISHLSDHP 77
>UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome
associated membrane protein 4; n=1; Macaca mulatta|Rep:
PREDICTED: similar to ribosome associated membrane
protein 4 - Macaca mulatta
Length = 177
Score = 39.9 bits (89), Expect = 0.031
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKE 250
M KQR+R+ANE SKNIT RGNV K+ K+
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTLKK 30
>UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 59
Score = 38.3 bits (85), Expect = 0.093
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQ 337
M+ + +R ++ +NI RG S K+KED + P++L IFVV GS + QI++
Sbjct: 1 MSQSRTLRQKSQKYQENIEKRGVA--SPKKKEDGLNINPYVLGFIIFVVVGSTLLQILK 57
>UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 78
Score = 34.7 bits (76), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 161 MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYP-VAPWLLALFIFVVCGSAIFQIIQ 337
M + R ANE +K+ + PK+T K + P ++ + L FVVCG +F++++
Sbjct: 1 MTQTPQQRRANEKFAKHEASKRGKPKTTTTKHNTKPSLSTGWVVLLAFVVCGGLVFELLR 60
Query: 338 SI 343
+
Sbjct: 61 IV 62
>UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG17922-PA - Tribolium castaneum
Length = 715
Score = 33.5 bits (73), Expect = 2.7
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 200 ASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSIRLA*TRLKTIQT 379
A+K T G PK T+E E + WL+ +F+F + I II + + T + +
Sbjct: 352 ATKTATSIGKNPKPTQEIEYMFMTVSWLMGVFVFALLIGQIRDIISTATRSKTEYRKL-V 410
Query: 380 DIYIPYQTR 406
D + Y R
Sbjct: 411 DETLEYMRR 419
>UniRef50_A2YNA9 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 208
Score = 33.1 bits (72), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 171 FGAIFLGYSIFVSYFLKLKAARATARVPRAEFLQPGIH*FRRPTAWSS 28
F A LGYS+ ++Y L +AA+ + PRA+ + FR P W +
Sbjct: 17 FAASTLGYSVAIAYSLSGRAAKMSLIRPRADHVAGTPTNFRGPDRWET 64
>UniRef50_Q2YHP1 Cluster: Monodehydroascorbate reductase; n=1;
Plantago major|Rep: Monodehydroascorbate reductase -
Plantago major (Common plantain)
Length = 151
Score = 32.7 bits (71), Expect = 4.6
Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 25 AGAPRGGASKLVD--PGLQEFGTR 90
AGAPRGG PGLQEFGTR
Sbjct: 2 AGAPRGGGRSRTSGSPGLQEFGTR 25
>UniRef50_UPI0000519EC5 Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 1
(Protein-tyrosine phosphatase 1B) (PTP-1B)
(Protein-protein-tyrosine phosphatase HA2) (PTP-HA2)
isoform 1; n=3; Endopterygota|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 1
(Protein-tyrosine phosphatase 1B) (PTP-1B)
(Protein-protein-tyrosine phosphatase HA2) (PTP-HA2)
isoform 1 - Apis mellifera
Length = 495
Score = 32.3 bits (70), Expect = 6.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 158 KMAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAP 277
K P + I NEI S + + N+ S+ E+ED+ P P
Sbjct: 293 KQLPSNNVNINNEIVSNHYDVVSNISNSSNEEEDEPPPLP 332
>UniRef50_A5ZEM4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides caccae ATCC 43185|Rep: Putative
uncharacterized protein - Bacteroides caccae ATCC 43185
Length = 714
Score = 32.3 bits (70), Expect = 6.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 433 DAPNHIDCTAGLIGNIYISLDSFKSGLGESYRLDYL 326
+A NH+D A L IY ++++ K + E+YR D L
Sbjct: 303 NASNHLDLAASLENAIYNNIENLKKNVPEAYRKDAL 338
>UniRef50_Q97RX5 Cluster: Cytochrome c-type biogenesis protein CcdA;
n=37; Streptococcus|Rep: Cytochrome c-type biogenesis
protein CcdA - Streptococcus pneumoniae
Length = 236
Score = 31.9 bits (69), Expect = 8.1
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -1
Query: 312 PQTTKIKRASSQGATGY*SSFSFVDLGTFPRKVIFLLAISFAMRILCFGAIFLGYSIFVS 133
P T + GA FS + + + R + F+ ISF +L +GA FLG ++ S
Sbjct: 28 PVYTGVLLDDKDGAQASSGKFS-ISVTSLLRTLAFIAGISFIFILLGYGAGFLGDLLYAS 86
Query: 132 YFLKLKAA 109
+F L A
Sbjct: 87 WFQYLTGA 94
>UniRef50_A3XNI3 Cluster: Putative uncharacterized protein; n=2;
Flavobacteriaceae|Rep: Putative uncharacterized protein
- Leeuwenhoekiella blandensis MED217
Length = 91
Score = 31.9 bits (69), Expect = 8.1
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -1
Query: 282 SQGATGY*SSFSFVDLGTFPRKVIFLLAISFAMRILCFGAIFLGYSIFVSYFLKL 118
S+ T Y + F LG F + F+ I FA +I+ F AI +I VSY LKL
Sbjct: 36 SEAFTLYPAIFPLALLG-FMVTLNFMFTIKFATKIISFLAILSVSTIIVSYILKL 89
>UniRef50_Q1E7C4 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 568
Score = 31.9 bits (69), Expect = 8.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 7 LPHKGTAGAPRGGASKLVDPGLQEFGTRD 93
+P +GT G PRG L+D GL E+ +D
Sbjct: 499 IPSRGTPGRPRGRHQGLLDAGLTEYDDQD 527
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,165,657
Number of Sequences: 1657284
Number of extensions: 10898353
Number of successful extensions: 29103
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29092
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -