Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N11
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       50   1e-06
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    44   7e-05
07_03_1282 - 25447736-25447813,25448670-25448744,25449212-254492...    29   1.6  
07_03_1128 - 24180130-24180152,24180629-24180669,24180787-241808...    28   3.6  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   3.6  
12_02_0989 - 25069052-25070134                                         27   6.3  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   6.3  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +2

Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGS 316
           KNIT RG+VP++T +K + YPV P +L  FIFVV GS
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +2

Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFV 304
           KNIT RG+VP++T +K + YPV P +L  FIFV
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFV 49


>07_03_1282 -
           25447736-25447813,25448670-25448744,25449212-25449281,
           25449515-25449747,25451210-25451719
          Length = 321

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 109 ESHSSCPSCRIPAARDP 59
           +SHS+CP CR PA  +P
Sbjct: 121 KSHSTCPLCRCPAVDEP 137


>07_03_1128 -
           24180130-24180152,24180629-24180669,24180787-24180878,
           24181059-24181144,24181277-24181424,24181505-24181542,
           24182301-24182322
          Length = 149

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 171 FGAIFLGYSIFVSYFLKLKAARATARVPRAE 79
           F A  LGYS+ ++Y L  +AA+ +   PRA+
Sbjct: 29  FAASTLGYSVAIAYSLSGRAAKMSLIRPRAD 59


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 110  REPQLVSLVPNSCSPGSTSLDAPP--RGAPAVP 18
            REPQ +   P S SP S+S  +PP  RG  ++P
Sbjct: 1222 REPQALVTKPPSPSPSSSSSSSPPVTRGRGSLP 1254


>12_02_0989 - 25069052-25070134
          Length = 360

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 106 SHSSCPSCRIPAARDPLV*TPHRVELQLFP 17
           +H+SCP CR   A  P V +P R   ++ P
Sbjct: 138 AHASCPLCRAAVALPPPVASPLRAARRVRP 167


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 153 QEKWHQNRGCALQMRSPAKISPCEEMSLNPQRKRKI 260
           QE W Q R  A++ R  A  S  +E   + Q KRK+
Sbjct: 458 QEAWAQERVTAMRAREKAMASLEQEKEKSSQAKRKL 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,991
Number of Sequences: 37544
Number of extensions: 298824
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)