Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N11
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.098
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.91 
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           29   1.6  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   4.9  
SB_14383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 33.5 bits (73), Expect = 0.098
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 390 IYISVWIVLSLV*ASRIDWIIWKIAEPQTTKIKRASSQG 274
           +++ +WIVLSL+    + ++IW I   +TT++  A  QG
Sbjct: 229 VFVPMWIVLSLLCLLVLYYVIWSIIFVRTTEVLPAQRQG 267


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 202 GDLICNAHPLFWCHFSWL*YICQLFSKIKGCESHSSC 92
           G   CNA+    CH  W   +C  F K K    H +C
Sbjct: 553 GHYSCNANGTKVCHKDWYGDLCTTFCKNKDSSEHYTC 589


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 197 IASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
           +A++N    G  P+   ++ D+  + P     F++++ G+A+FQ I+S
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIES 174


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 488 IVDIYTCIFLAHNKRYFVGRSKSHRLHCGFDREYIY 381
           I+ +YT  F+A  + Y V R   ++     +R+Y+Y
Sbjct: 818 IISVYTLTFMAVERWYAVARPHQYKAMFAKNRKYLY 853


>SB_14383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 107 EPQLVSLVPNSCSPGS-TSLDAPP 39
           EP+ V+ V NSCSPG    L+ PP
Sbjct: 16  EPKRVNAVSNSCSPGDPLVLERPP 39


>SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 113 LREPQLVSLVPNSCSPGS-TSLDAPP 39
           LR    +SL+ NSCSPG    L+ PP
Sbjct: 26  LRSTVSISLISNSCSPGDPLVLERPP 51


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 335 QSIRLA*TRLKTIQTDIYIPYQTRSAIYVIWSVLQNTFYCVLEIYMYKC 481
           +SI+   T   +  T +Y P+   SAI + WSV  NT       Y+ +C
Sbjct: 258 ESIKNTCTGPPSPPTSLYKPFLNSSAITLSWSVPNNTGGRTDVYYLIEC 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,593
Number of Sequences: 59808
Number of extensions: 345248
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)